PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA038072-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 374aa    MW: 42455 Da    PI: 7.6358
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA038072-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.31.8e-111422382190
              FAR1  21 kskrngeitkrtfvCskegkreeekkk.............................tekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                       + +++ + ++r+f C    k+e+++k+                              e +r++ ++ + +Cka++ v ++ d+kw+v+ ++ e
  BGIOSGA038072-PA 142 H-DDEPKLIRRKFECVHARKPENTTKDraggssfisegnkenppllkgkkkkapllVEGKRKRPKVAKYDCKAHMAVGLR-DNKWRVIAFQPE 232
                       3.3566799**************99999***************************98899999999**************.9*********** PP

              FAR1  85 HnHela 90 
                       H H+++
  BGIOSGA038072-PA 233 HMHPMV 238
                       ***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-9144238IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MAHLIHQVER DFPPSSSSAN GGTTPIHNAT NLIDVQAPST SGGFLDVLLS KSTRHETDFV  60
VDVESVDNTD VAVVTVEIDE QLDEDASEND EEEKDVVCSP PIVPYIGMEF DTVEEARNKQ  120
PGIIGGEKAS KKYKVFENGN NHDDEPKLIR RKFECVHARK PENTTKDRAG GSSFISEGNK  180
ENPPLLKGKK KKAPLLVEGK RKRPKVAKYD CKAHMAVGLR DNKWRVIAFQ PEHMHPMVKR  240
LGRRRYYISH RHISNEDYEF LKTLYDRNIA TSQILALLGD LLGGVRNLTF TAKDVSNLRT  300
KLRQQVSLKD VAMTIDYFQK TQADNPSFYA ARYDEDNVLK ALFWVDGRTR KLYQSYKDCV  360
FFDTTFGVDL CQRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188202KKKKAPLLVEGKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8BA790.0B8BA79_ORYSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1484922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-18FAR1-related sequence 5