PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA038100-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 402aa    MW: 43870.2 Da    PI: 6.8935
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA038100-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.6e-11347396147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       r++W++  ++ l+++v+++G+g+Wk I    +   + R+  ++k++++++
  BGIOSGA038100-PA 347 RKKWSEKQEKTLLEGVEKYGKGNWKDIKMAYPdvfEDRSTVDLKDKFRNL 396
                       789*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.141342401IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-11343396IPR009057Homeodomain-like
SuperFamilySSF466891.64E-13345397IPR009057Homeodomain-like
SMARTSM007171.2E-7346399IPR001005SANT/Myb domain
PfamPF002491.4E-9347396IPR001005SANT/Myb domain
CDDcd116603.63E-21348398No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MTPADAFLIL DFLAGNRLIP HSVFTTLLAS LPSVSPHTSP RLRAGLALRA LDSALSISES  60
SEMDAPTLLR KARAVLADPD LAPFFPQHLA APASADDAPA AAVAHLNRLL DVEWASLPPS  120
SLEIAAERIV GSQALHSWAN ADHAQRSKLR LLVGESTALE ILDTLQRPDA STNHPGTLPQ  180
VDNAPETNGA SHCAQQNDGA KSGLVKQNAE ADRPQQDSTR HQQDSVQGAS NSQLKESSVT  240
MESIRGTGPD ITGFMEEATP RVAGQFAPDN IKNHQVTGSK RSLMERNPTA STYEGEHLCN  300
IMVVSHRIFE VQWDGSDSEG KRPAAKRRLP IFERTAKPSP TAAHKTRKKW SEKQEKTLLE  360
GVEKYGKGNW KDIKMAYPDV FEDRSTVDLK DKFRNLERHL CA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.891860.0panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329819630.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0719400.0AK071940.1 Oryza sativa Japonica Group cDNA clone:J013077N22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646481.10.0uncharacterized protein LOC4344404
TrEMBLQ6Z3X40.0Q6Z3X4_ORYSJ; Os07g0695900 protein
STRINGOS07T0695900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139982224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-11TRF-like 5