PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA038325-PA
Common NameSUB1A
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 271aa    MW: 29643.7 Da    PI: 4.7853
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA038325-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-16109157355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       y+G+r+++ +grW +eIrdp+    +  r +lg+f+ta eAa a++a +++++g
  BGIOSGA038325-PA 109 YHGIRQRP-WGRWSSEIRDPV----KgVRLWLGTFDTAVEAALAYDAEARRIHG 157
                       89******.**********75....44************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.4E-33108171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-28108165IPR001471AP2/ERF domain
PROSITE profilePS5103220.982108165IPR001471AP2/ERF domain
PRINTSPR003671.6E-9109120IPR001471AP2/ERF domain
CDDcd000181.06E-25109164No hitNo description
SuperFamilySSF541714.25E-20109165IPR016177DNA-binding domain
PRINTSPR003671.6E-9131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MPAAPFTPRH GDGETWVDRK RRNKKKRKRG ADEEWEAAFQ EFMAADDDDD GGGLVLSSKS  60
LVLRSPGEND AGRGAAATMS MPLDPVTEEA EPAVAEKPRR RRPRRSYEYH GIRQRPWGRW  120
SSEIRDPVKG VRLWLGTFDT AVEAALAYDA EARRIHGWKA RTNFPPADLS SPPPPPQPLC  180
FLLNDNGLIT IGEAPTDDAA STSTSTTEAS GDARIQLECC SDDVMDSLLA GYDVASGDDI  240
WTWTSGASST SVNQEIKTPS IHQNISYAGE A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-17108165563ATERF1
3gcc_A2e-17108165563ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11828RKRRNKKKRKR
21928KRRNKKKRKR
32028RRNKKKRKR
496103KPRRRRPR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.284069e-59leaf| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172333069e-59
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0116070.0DQ011607.1 Oryza sativa (indica cultivar-group) cultivar Teqing clone TQR14A11, complete sequence.
GenBankFR7204600.0FR720460.1 Oryza rufipogon sub1A-2 gene, bio material IRGC 82982.
GenBankFR7204610.0FR720461.1 Oryza rufipogon sub1A-2 gene, bio material IRGC 105960.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696560.17e-50PREDICTED: ethylene-responsive transcription factor RAP2-2-like
TrEMBLG7ZKY80.0G7ZKY8_ORYRU; Uncharacterized protein
TrEMBLQ0P1700.0Q0P170_ORYSI; SUB1A-2 protein
STRINGONIVA01G39120.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152001318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.13e-18ERF family protein
Publications ? help Back to Top
  1. Xu K, et al.
    Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice.
    Nature, 2006. 442(7103): p. 705-8
    [PMID:16900200]