PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA038559-PA

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 327aa MW: 37066.5 Da PI: 7.2244

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA038559-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.4	7.5e-16	110	195	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgk..wevtkleleHnHela 90 fYn+Y +++GF+vrks+s+ r+ +Cskegk++ + ++ +k++r+r + r+gC+a ++v++ ++ + ++++ +HnH+l+ BGIOSGA038559-PA 110 FYNKYVEHAGFDVRKSRSRAA-------YREICCSKEGKNKYRGDE-TKRERRRGSARIGCRAYVRVRNVVieGDVvsVVFDDVVVQHNHPLT 194 **************98877.......7899********99.9999999**********99874333113446889****98 PP FAR1 91 p 91 p BGIOSGA038559-PA 195 P 195 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-11	110	195	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MASGGEDPGP SDVRSHVPAL VADRSHLMQG NDVRLHDDVQ RGGLQQLGGG DGGGDTGSES 60 TRTDRPPCVD DAHMRMPTRN VMHIHGAHVP DEMVPKFGME FKLYEMAYAF YNKYVEHAGF 120 DVRKSRSRAA YREICCSKEG KNKYRGDETK RERRRGSARI GCRAYVRVRN VVIEGDVVSV 180 VFDDVVVQHN HPLTPSPSAV KHMRSHKQRG DTLMEFVDTM QQCRIPQSSI MGVLSDMHGD 240 RESIPFTTRD LENRKAANVR EENADDISKL LKFFNECKKD NPKFYWDIRT DEEGVVKNVF 300 WSHASMQAEY ADFGDAITFD QCSKNRH

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.78825	0.0	panicle

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	115468075	0.0

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL844875	0.0	AL844875.4 Oryza sativa chromosome 12, . BAC OSJNBb0032I14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	0.0	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612933.1	7e-94	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_015612934.1	7e-94	protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBL	A0A0P0Y934	0.0	A0A0P0Y934_ORYSJ; Os12g0287500 protein
TrEMBL	B9GCP9	0.0	B9GCP9_ORYSJ; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7609	10	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-26	FAR1-related sequence 5