PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA038821-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 129aa    MW: 14468.7 Da    PI: 6.2254
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA038821-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.2e-14201262110
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkf 93 
                       v lL ecA +v++g++e+a+   ++++ l   ++ p+qRl + ++  La+rl++s ++l  al  ps+    + s+  aa++ f+++ P+l  
  BGIOSGA038821-PA  20 VPLLHECASHVTEGSFEKADFSFKKIRMLT-IADGPLQRLSTIIVDSLAHRLLSSIQGLPGALiDPSDYF--EKSTLRAARHNFFKLNPYLST 109
                       6799**********************9876.5667*******************9999998874444443..35555567778********** PP

              GRAS  94 shltaNqaIleavegee 110
                       +++t N aI+ea+e e+
  BGIOSGA038821-PA 110 GFVTINWAIMEAMEDEK 126
                       **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.2471129IPR005202Transcription factor GRAS
PfamPF035142.5E-1120126IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MMHGLWVQDQ GVVDHLAQLV PLLHECASHV TEGSFEKADF SFKKIRMLTI ADGPLQRLST  60
IIVDSLAHRL LSSIQGLPGA LIDPSDYFEK STLRAARHNF FKLNPYLSTG FVTINWAIME  120
AMEDEKVTV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.938640.0callus| flower| panicle| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2427940.0AK242794.1 Oryza sativa Japonica Group cDNA, clone: J090058A05, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616661.11e-88scarecrow-like protein 3 isoform X2
TrEMBLA0A0P0XYU02e-91A0A0P0XYU0_ORYSJ; Os11g0141550 protein
STRINGOS11T0141550-014e-92(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5381422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.17e-13scarecrow-like 3