PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA039617-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 92aa    MW: 9586.49 Da    PI: 9.9473
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA039617-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-072232043
                      TTT-HHHHHHHHTTTS-HHHHHHH CS
   Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksr 43
                      G+ tW+ Ia++++ gRt++++k++
  BGIOSGA039617-PA  2 GS-TWSIIASKLP-GRTDNDVKNH 23
                      44.5*********.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-7123IPR009057Homeodomain-like
SuperFamilySSF466891.14E-5230IPR009057Homeodomain-like
CDDcd001676.54E-4522No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MGSTWSIIAS KLPGRTDNDV KNHHQPPPQQ QHHHHHHHRV AGGGARVTLV SPPPTPQSQY  60
ASMQPSSASA SSSGGNACSF GAAAMYSPSP ST
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.49012e-79callus| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977202942e-79
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126091e-79CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631660.13e-28transcription factor MYB4-like
TrEMBLA0A0E0I3C81e-31A0A0E0I3C8_ORYNI; Uncharacterized protein
STRINGONIVA07G19920.12e-32(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3911222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.13e-08myb domain protein 87