PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA040495-PA

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 552aa MW: 63740.7 Da PI: 5.0297

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA040495-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34.1	9.2e-11	345	393	2	47
FAR1 2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk 47 f+n+YA+ vGFs+++++++k+ krngeit++t++C+ + ++ ++ BGIOSGA040495-PA 345 FFNFYAYLVGFSIVITHHYKTtskKRNGEITRYTYQCYSKIPDKYIIER 393 9*****************99999**********988666655444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.5E-9	345	393	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence Send to blast
MDKKEEKKKK NKQMDQEDGT KKMKLTKETK LPGTISAAET TKDIKLQTKK KEPIQMKGNT 60 QSKTCIRDII ESEELKIKKT VEGSHYLQDF EKCKKSGTIG SEIGENKAQL LYDQYTFLNE 120 NERLVQGGQM SYTNLMQQII QSPRVSLQAN ENSMILTTSR FSPQESHQHD RLYEEQISTE 180 HWSYEEFDRL YNNSNMVTWT EGGPEKSIEE LYESKNIHFK RKRDDTNITN EGNDDPNIGE 240 IDDLQLLNSG NEAEEIHNGE IYDQSTKENQ ETTYGQNVQD CGEQVTITST NEASTSNANS 300 SAEAISEEDI DNFLENEEGN KIQIDKKHIP DIGMEFRSDK EAHGFFNFYA YLVGFSIVIT 360 HHYKTTSKKR NGEITRYTYQ CYSKIPDKYI IERWRKKERK CTARIENKAT NENSSVLRFN 420 VLSRRMADMA SKASKRKDTY LYMLDQMDKL DGNLDLLLEE GDQNLPHDGN STIEEAIGQQ 480 ANQETLNEEE EEEEEIEDPD LANTKGKKSA RTKGIVEKLK EGLLKQRRNQ NGNRQQVPQA 540 KVMYTYLAIK TE

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence Send to blast

MDKKEEKKKK NKQMDQEDGT KKMKLTKETK LPGTISAAET TKDIKLQTKK KEPIQMKGNT  60
QSKTCIRDII ESEELKIKKT VEGSHYLQDF EKCKKSGTIG SEIGENKAQL LYDQYTFLNE  120
NERLVQGGQM SYTNLMQQII QSPRVSLQAN ENSMILTTSR FSPQESHQHD RLYEEQISTE  180
HWSYEEFDRL YNNSNMVTWT EGGPEKSIEE LYESKNIHFK RKRDDTNITN EGNDDPNIGE  240
IDDLQLLNSG NEAEEIHNGE IYDQSTKENQ ETTYGQNVQD CGEQVTITST NEASTSNANS  300
SAEAISEEDI DNFLENEEGN KIQIDKKHIP DIGMEFRSDK EAHGFFNFYA YLVGFSIVIT  360
HHYKTTSKKR NGEITRYTYQ CYSKIPDKYI IERWRKKERK CTARIENKAT NENSSVLRFN  420
VLSRRMADMA SKASKRKDTY LYMLDQMDKL DGNLDLLLEE GDQNLPHDGN STIEEAIGQQ  480
ANQETLNEEE EEEEEIEDPD LANTKGKKSA RTKGIVEKLK EGLLKQRRNQ NGNRQQVPQA  540
KVMYTYLAIK TE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012618	0.0	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.