PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA040511-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 286aa    MW: 30931.9 Da    PI: 10.8582
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA040511-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.2e-083761227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      k +lC+ +++ G C+ G  C++aHg+
  BGIOSGA040511-PA 37 KSVLCMKWRE-GRCHNGVACRYAHGE 61
                      678*******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-63365IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-93565IPR000571Zinc finger, CCCH-type
SMARTSM003560.00113561IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2063562IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-63761IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDSAAAERPS SYAVNFPPLL PAPAPAVAGA MGVANHKSVL CMKWREGRCH NGVACRYAHG  60
EEDQQIVPEM RVGGGGTSMH ARSSPPRDGA SSGSTASIAM AACRIEEQRH GRGGSPSFYH  120
ARGGNVRKKY TEARAARGGA ARGWWGEELW RAAGEGQRAG SGKRSDARAA PPATAHEEVP  180
GRRRASAFIM SGFKSSQAEV TESTPRRLLT PPSNRHADWR RLPDAAVARV LDLFRLGYLF  240
SPRWIHLWHR LPLYLHDRQF TTPSIPAGNV AHAITNVLEL HVGNGV
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329966421e-100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0059120.0AP005912.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0064I23.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0H0N01e-167A0A0E0H0N0_ORYNI; Uncharacterized protein
STRINGONIVA04G10330.11e-168(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3154444