PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA040624-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 482aa    MW: 56531.9 Da    PI: 8.5126
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA040624-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.65.6e-1517103191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgk....wevtkleleHnHel 89 
                       +fY++YA+++GF+++ks+++ks        ++ +C++egk+ ++  +  +++r+++++++gCka +k++ ++dg+     + + +el+HnH+l
  BGIOSGA040624-PA  17 NFYKTYAYHAGFDIKKSRTHKS-------IHEVCCTREGKHVSKVAD-CDRERKKPSKKMGCKAYVKLRHNHDGVvlssVQYDVVELQHNHPL 101
                       6*****************9999.......6789**********9999.899999*****************865411113444566******9 PP

              FAR1  90 ap 91 
                       +p
  BGIOSGA040624-PA 102 TP 103
                       86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-1017103IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.803403439IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MVPTKGMAFP TYDDPYNFYK TYAYHAGFDI KKSRTHKSIH EVCCTREGKH VSKVADCDRE  60
RKKPSKKMGC KAYVKLRHNH DGVVLSSVQY DVVELQHNHP LTPSPSAVKH MRAHKNHDDT  120
AMKIVDTMQE SHVPQSCIMG VLYDLHGGLD KIPFTTRDVE NRKAANVRME NANDINKLLE  180
FFNECTLQNP KFYWDAQLDE NDQDPAMAVA VGRCFPRIIH RLCRWHILNC HSDPLNTIFE  240
RNEQIEPDMM LCINQTYKPY EFETSWDQFL KRYDLEGCPI MKALYDIREK WVPAFFRKDY  300
CGRMTSTQRS ESMNKRMLEV ITDRKEKEAA ETRACSGKPM LAVRWPFVIQ MSRLYTRAAF  360
RLFEEALQDS TDLRISQDHD FRNGWIVSHT KRSEKHDWCQ KQFKLIADVD AGVFTCECKQ  420
WEHTCMFCTH MLRAFVHVQL EKIPAAYILK RYTKKVKSDV PFDRHDREAT GPMVFKKITG  480
QT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054680.0AP005468.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0020P04.
GenBankAP0057730.0AP005773.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0085C03.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882211.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLB9F9P60.0B9F9P6_ORYSJ; Uncharacterized protein
STRINGORGLA03G0393200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP649725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-33FAR1-related sequence 5