PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy01g05880
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 237aa    MW: 28238.6 Da    PI: 7.5003
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy01g05880genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2285.1e-09101123123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  C k+F+r++nLk H+r H
  Bathy01g05880 101 HECDVCEKVFTRSDNLKAHMRIH 123
                    78*******************99 PP
2zf-C2H224.76.1e-08129151123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+Fs++s Lk+H r H
  Bathy01g05880 129 YECDVCEKRFSDSSALKNHTRIH 151
                    99*******************99 PP
3zf-C2H223.31.6e-07157179123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C+k F++  +L++H r H
  Bathy01g05880 157 YECDVCDKAFRQYGHLQKHTRIH 179
                    99*******************99 PP
4zf-C2H226.12.2e-08185207123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++snLk+H r H
  Bathy01g05880 185 YECDVCEKRFTQSSNLKSHKRIH 207
                    99*******************99 PP
5zf-C2H219.13.5e-06213236123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C+ C k+++   +Lk H+rt H
  Bathy01g05880 213 YECHVCEKRYRYAKSLKYHMRTqH 236
                    99********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-1599123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.8E-19100151No hitNo description
PROSITE profilePS5015715.812101128IPR007087Zinc finger, C2H2
SMARTSM003551.6E-4101123IPR015880Zinc finger, C2H2-like
PfamPF000965.4E-7101123IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-18124155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.0E-4129151IPR015880Zinc finger, C2H2-like
PfamPF000961.5E-5129151IPR007087Zinc finger, C2H2
PROSITE profilePS5015716.165129156IPR007087Zinc finger, C2H2
PROSITE patternPS000280131151IPR007087Zinc finger, C2H2
SuperFamilySSF576675.89E-23138194No hitNo description
Gene3DG3DSA:3.30.160.608.1E-17156186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.3E-4157179IPR015880Zinc finger, C2H2-like
PfamPF000961.2E-5157179IPR007087Zinc finger, C2H2
PROSITE profilePS5015716.456157184IPR007087Zinc finger, C2H2
PROSITE patternPS000280159179IPR007087Zinc finger, C2H2
SuperFamilySSF576679.85E-19179231No hitNo description
SMARTSM003555.4E-4185207IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.706185212IPR007087Zinc finger, C2H2
PfamPF000964.7E-6185207IPR007087Zinc finger, C2H2
PROSITE patternPS000280187207IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-18187207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.603.2E-10208234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.011213236IPR007087Zinc finger, C2H2
SMARTSM003550.0061213236IPR015880Zinc finger, C2H2-like
PfamPF139120.0033213236IPR007087Zinc finger, C2H2
PROSITE patternPS000280215236IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGRRKNPHPK RAVNARTVLK VARDKEEEVE EEEPVLCSRI PDEEDDLEAN QNQIRKEEEE  60
EEGEDDDVEQ LRRIMCVPCD DVVEQNQTRK DAKGVKRKRG HECDVCEKVF TRSDNLKAHM  120
RIHTNEKPYE CDVCEKRFSD SSALKNHTRI HTNERPYECD VCDKAFRQYG HLQKHTRIHT  180
NEKPYECDVC EKRFTQSSNL KSHKRIHTKE KPYECHVCEK RYRYAKSLKY HMRTQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A5e-39802344188Aart
2i13_B5e-39802344188Aart
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822780.0FO082278.1 Bathycoccus prasinos genomic : Chromosome_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007515164.11e-173PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
TrEMBLK8EXR71e-172K8EXR7_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007515164.11e-172(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-14C2H2 family protein