PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy01g06670
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 179aa    MW: 21562.4 Da    PI: 8.9127
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy01g06670genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H226.41.6e-087193123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C  C k+F+ +s+L +H+rtH
  Bathy01g06670 71 HECDVCEKVFRYPSYLAKHMRTH 93
                   78********************9 PP
2zf-C2H217.71e-0599121123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC  C k+F+ +  Lk H r H
  Bathy01g06670  99 YKCDVCEKRFRYSNGLKYHTRIH 121
                    9********************99 PP
3zf-C2H228.82.9e-09127149123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C+k F+++s+L++H+r H
  Bathy01g06670 127 YECDFCDKAFRDSSSLTKHMRIH 149
                    99*******************99 PP
4zf-C2H219.62.5e-06155178123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    ykC  C k+++   +L+ H+rt H
  Bathy01g06670 155 YKCDVCEKRYRYAQSLRYHMRTqH 178
                    9*********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.87E-1870121No hitNo description
Gene3DG3DSA:3.30.160.602.4E-1571100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.9E-47193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.9817198IPR007087Zinc finger, C2H2
PfamPF000961.8E-67193IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM003550.003399121IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015715.56399126IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-15101120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
SuperFamilySSF576672.23E-23108164No hitNo description
PfamPF134652.5E-10113136IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-18121146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015716.976127154IPR007087Zinc finger, C2H2
SMARTSM003552.2E-5127149IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.9E-15147176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.344155178IPR007087Zinc finger, C2H2
PfamPF139125.5E-6155178IPR007087Zinc finger, C2H2
SMARTSM003558.5E-4155178IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280157178IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGRRKNPHPK RAVNARTVLK GEKEEPLVLC SRIPDEDDDF EANHHQIQKE EEEEEEEEIT  60
VRKGAKRKRG HECDVCEKVF RYPSYLAKHM RTHTKEKPYK CDVCEKRFRY SNGLKYHTRI  120
HTNEKPYECD FCDKAFRDSS SLTKHMRIHT NEKPYKCDVC EKRYRYAQSL RYHMRTQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5v3j_E1e-25591765284Zinc finger protein 568
5v3j_F1e-25591765284Zinc finger protein 568
5v3m_C1e-25591765310Zinc finger protein 568
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822780.0FO082278.1 Bathycoccus prasinos genomic : Chromosome_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007515587.11e-129PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
SwissprotP394131e-33AEF1_DROME; Adult enhancer factor 1
SwissprotQ9UJL95e-33ZF69B_HUMAN; Zinc finger protein 69 homolog B
TrEMBLK8E9V51e-128K8E9V5_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007515587.11e-129(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.12e-11C2H2 family protein