PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy01g06780
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 238aa    MW: 28265 Da    PI: 8.7209
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy01g06780genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H226.71.4e-08102124123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  C k+F+ +s+L+rH+rtH
  Bathy01g06780 102 HECDVCEKVFRYPSQLTRHMRTH 124
                    78********************9 PP
2zf-C2H224.19.4e-08130152123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC  C k+F+++ +L++H+r H
  Bathy01g06780 130 YKCDVCWKCFRQSGHLQTHMRIH 152
                    9********************99 PP
3zf-C2H228.92.7e-09158180123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C+k F+++ nLkrH+r H
  Bathy01g06780 158 YECDFCDKAFRDSGNLKRHMRIH 180
                    99*******************99 PP
4zf-C2H218.26.7e-06186208123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C  +F+++ +L++H   H
  Bathy01g06780 186 YECDVCEWRFRHSGHLRSHKLIH 208
                    99*****************9988 PP
5zf-C2H219.42.9e-06214237123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C  C k+F+r+ +LkrH r+ H
  Bathy01g06780 214 YECDLCEKRFRRSNTLKRHKRLcH 237
                    99*******************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015715.604102129IPR007087Zinc finger, C2H2
SMARTSM003551.7E-4102124IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.93E-18102152No hitNo description
Gene3DG3DSA:3.30.160.605.1E-16102130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000967.6E-7102124IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
SMARTSM003555.3E-4130152IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015715.999130157IPR007087Zinc finger, C2H2
PfamPF000969.4E-6130152IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-15131149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
SuperFamilySSF576673.19E-23139195No hitNo description
Gene3DG3DSA:3.30.160.605.6E-20150177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.5E-6158180IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.727158185IPR007087Zinc finger, C2H2
PfamPF000963.4E-7158180IPR007087Zinc finger, C2H2
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-17178205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.74E-18180232No hitNo description
SMARTSM003550.0078186208IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.711186213IPR007087Zinc finger, C2H2
PROSITE patternPS000280188208IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.5E-13206234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128740.0067214233No hitNo description
SMARTSM003550.0095214237IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.882214237IPR007087Zinc finger, C2H2
PROSITE patternPS000280216237IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MRTVGVNLLL PSKVSRTSTY TTARRRKSPH PKRAVNARRT VLKVSREEEE PNLVLCLRIP  60
DDEEDGLEAN QNQIQKEDEE EGVEEGEEEI TVREGAKRKI GHECDVCEKV FRYPSQLTRH  120
MRTHTNEKPY KCDVCWKCFR QSGHLQTHMR IHTNEKPYEC DFCDKAFRDS GNLKRHMRIH  180
TNERPYECDV CEWRFRHSGH LRSHKLIHTG EKPYECDLCE KRFRRSNTLK RHKRLCH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A5e-3610223415188Aart
2i13_B5e-3610223415188Aart
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822780.0FO082278.1 Bathycoccus prasinos genomic : Chromosome_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007515256.11e-176PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
SwissprotP100739e-43ZSC22_HUMAN; Zinc finger and SCAN domain-containing protein 22
TrEMBLK8ENW41e-175K8ENW4_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007515256.11e-175(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.16e-11C2H2 family protein