PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy01g07090
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family E2F/DP
Protein Properties Length: 757aa    MW: 83891.4 Da    PI: 6.1119
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy01g07090genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.71e-11198242147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT  E+ l+ d+ k++G   Wk+  +++  ++t  q++s+ qk+
    Bathy01g07090 198 RERWTDAEHALFTDGLKMYGRA-WKKLEERVR-TKTVVQIRSHAQKF 242
                      78******************88.*********.************98 PP
2E2F_TDP69.54.1e-22376441171
        E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                    r++ksL ll+++fl+l+++  e+ ++l+ev+++L    v  +rRRiYDi+NVLea++++ kk kn++ w g
  Bathy01g07090 376 RQSKSLSLLCERFLSLYSSGYENLISLDEVCSTL---GV--ERRRIYDIVNVLEAVEVVVKKGKNQYAWFG 441
                    679*******************************...**..****************************76 PP
3E2F_TDP59.35.9e-19520609170
        E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse...............dvknkrRRiYDilNVLealnliek.....kekneirwk 70 
                    r+eksL l+tqkf++l+ ++e+g++ l+++a +++                 + k+k RR+YDi+N+L++l+l++k     ++k+++rw+
  Bathy01g07090 520 RREKSLSLMTQKFITLFMEAEDGVLGLEDAAAAMLMSegstgpkatkdfndnELKKKIRRLYDIANILSSLRLLSKihlmdSRKPAFRWM 609
                    689*************************9999887666*************99999************************99*******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.326193247IPR017930Myb domain
SuperFamilySSF466891.94E-13193248IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-11197245IPR006447Myb domain, plants
SMARTSM007171.4E-8197245IPR001005SANT/Myb domain
PfamPF002492.9E-8198241IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-5198239IPR009057Homeodomain-like
CDDcd001671.87E-5200243No hitNo description
Gene3DG3DSA:1.10.10.103.1E-24372442IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.09E-14376439IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.5E-26376441IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023199.8E-20378441IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-18516609IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.9E-8520597IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.5E-23520610IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.7E-16522609IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MMMLLERKAT TTTRDDDDDI KNAAAAEEVS RENFQNHEGE DEKNTTTQEK KLKKKKKKKR  60
DVDGTTTMRD AEQGDDDQFV RGAEEERVAA KRKRKEEGEV VMKGLREGFG VNTTVATAET  120
TTTQTTTTTR EQRVEEEKEE EEEEEDERQP RDPMTIDCVD IEHTRAEDAP LSSSSSPPPL  180
LLLASSKKTT SATVKQPRER WTDAEHALFT DGLKMYGRAW KKLEERVRTK TVVQIRSHAQ  240
KFFDKLQRGE GMEEESKEEK KALLKAWARK VVGGGAGETS DTNTAGDVPA STPTTKATKK  300
KSGALTAEEA PPLSQVETAA TRMEAPTKRD ELNESIQKDV KDPMTTPTPT TEKFAAEVVD  360
YNIDGNTTSN SNKKTRQSKS LSLLCERFLS LYSSGYENLI SLDEVCSTLG VERRRIYDIV  420
NVLEAVEVVV KKGKNQYAWF GVSRLPSAIE KIEKFGAESF DIKLPEKLSL QVFENSLPFQ  480
SGGKDAINGV KSVANGEEDP TLPANKAKAT AAGKKETSER REKSLSLMTQ KFITLFMEAE  540
DGVLGLEDAA AAMLMSEGST GPKATKDFND NELKKKIRRL YDIANILSSL RLLSKIHLMD  600
SRKPAFRWMR AEDTIRKLIA TGKEHEWFGT TPKSPDARGQ LVVSPVKEGV SDDAAIGALT  660
TDTVPRLLPS AITALGRKDR HVFAALQTME KLLQAQAEDL SAKSAAQSTV PDGQKKIPEM  720
FLTTANLFGA GESFQSKTGD GIFNQYINNF TQNMRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A3e-323736021228Transcription factor E2F8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14957KKLKKKKKK
24958KKLKKKKKKK
35057KLKKKKKK
45359KKKKKKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822780.0FO082278.1 Bathycoccus prasinos genomic : Chromosome_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007515521.10.0predicted protein
TrEMBLK8EPS50.0K8EPS5_9CHLO; Uncharacterized protein
STRINGXP_007515521.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41861012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.13e-35DP-E2F-like 1