PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy02g01020
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 144aa    MW: 17013.2 Da    PI: 7.5373
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy02g01020genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.92.2e-0792114123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  C k+F+ +s L  H+rtH
  Bathy02g01020  92 HECDFCEKVFRYPSKLAEHMRTH 114
                    78********************9 PP
2zf-C2H226.71.4e-08120143123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C+ C k+F    nL+rH+rt H
  Bathy02g01020 120 YECEVCEKRFALAGNLERHMRTqH 143
                    99********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.0E-1791141No hitNo description
Gene3DG3DSA:3.30.160.605.0E-1492120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.7E-492114IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.75292119IPR007087Zinc finger, C2H2
PfamPF000962.0E-592114IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SMARTSM003551.3E-4120143IPR015880Zinc finger, C2H2-like
PfamPF000968.2E-6120143IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.362120143IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-10121141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280122143IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MRRKNPHPKR AVNARTVLKG EKEEPLVLCS RIPDEEADLE ANHHQIQKEE EEEGEDDDVE  60
RLRRIMCVPR DDVVEQNQTR KDAKGVKRKR GHECDFCEKV FRYPSKLAEH MRTHTKEKPY  120
ECEVCEKRFA LAGNLERHMR TQH*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822770.0FO082277.1 Bathycoccus prasinos genomic : Chromosome_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007514689.11e-101EGL-43
TrEMBLK8EB032e-99K8EB03_9CHLO; EGL-43
STRINGXP_007514689.11e-100(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653