PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy02g04070
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 192aa    MW: 22785.6 Da    PI: 6.7782
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy02g04070genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.71.1e-0684106123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  C k+F ++s L+ H r H
  Bathy02g04070  84 HECDFCEKVFVTPSALTIHKRIH 106
                    78*******************99 PP
2zf-C2H224.47.5e-08112134123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k++++  nLk+H+r H
  Bathy02g04070 112 YECDVCEKRCTTAGNLKVHMRIH 134
                    99*******************99 PP
3zf-C2H223.51.4e-07140162123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+ + +Lk H+r H
  Bathy02g04070 140 YECDVCEKCFRESGTLKIHMRIH 162
                    99*******************99 PP
4zf-C2H217.61.1e-05168191123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C  C+k++++  +L+ H rt H
  Bathy02g04070 168 YECDVCKKRYRSAQSLRYHTRTqH 191
                    99********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015714.62784111IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-1484112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139120.008584106IPR007087Zinc finger, C2H2
SMARTSM003550.001484106IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SuperFamilySSF576674.71E-2392149No hitNo description
PfamPF000969.3E-6112134IPR007087Zinc finger, C2H2
PROSITE profilePS5015714.253112139IPR007087Zinc finger, C2H2
SMARTSM003557.4E-5112134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.2E-14113131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-18132159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.42E-19134186No hitNo description
PROSITE profilePS5015715.791140167IPR007087Zinc finger, C2H2
SMARTSM003556.7E-4140162IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280142162IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-13160189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.032168191IPR007087Zinc finger, C2H2
PfamPF139121.4E-6168191IPR007087Zinc finger, C2H2
SMARTSM003550.0035168191IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280170191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MRRKNPHPKR AVNARTVFKV VKGRREEEEV EEDEPVLCLR IPDEEDDLEA NHHQIQKEEE  60
GEEEEEEEEE EITVRKGAKR KRGHECDFCE KVFVTPSALT IHKRIHTNEK PYECDVCEKR  120
CTTAGNLKVH MRIHTNEKPY ECDVCEKCFR ESGTLKIHMR IHTNEKPYEC DVCKKRYRSA  180
QSLRYHTRTQ H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A1e-23841897188Aart
2i13_B1e-23841897188Aart
6e93_A3e-24821882107Zinc finger and BTB domain-containing protein 38
6e94_A4e-24821882107Zinc finger and BTB domain-containing protein 38
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822770.0FO082277.1 Bathycoccus prasinos genomic : Chromosome_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007514571.11e-136PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
SwissprotQ8NB502e-32ZFP62_HUMAN; Zinc finger protein 62 homolog
TrEMBLK8EAM51e-135K8EAM5_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007514571.11e-135(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.17e-11C2H2 family protein