PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bathy03g01310

Organism

Bathycoccus prasinos

Taxonomic ID

41875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus

Family

Nin-like

Protein Properties

Length: 973aa MW: 107612 Da PI: 9.939

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bathy03g01310	genome	ORCAE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	49.5	8.3e-16	761	805	5	49
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49 i+ ++++ F++p+++AAke+gv+ T+ Kr R +GI+RWP+ + Bathy03g01310 761 ITRAMIEQRFHMPLREAAKEVGVGRTTFKRVLRLHGIERWPSQSL 805 88899************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.254	743	828	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-14	761	806	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 973 aa Download sequence Send to blast
MGKRELAQII AAQEWHDPTK WVSKKNKREE NAADEKKTRK TNVSSGSVKK VRKSTETTRK 60 TNTSSSANEK TKDKKEESQY SKSSKLSTRE TTTAVVASAR SKSVTPASEE EKKKLDDDDD 120 DPRRTFDLLG NVGAAATGKK RGTLTSAEEK LAKRKDIDEE EKEEEKDAGS KEPETTLRTR 180 VKVKEEEGSP PPPFPLRASA KKAPIVEKEK GENGVSHSPP KPTKVLDDEE KIKEDPMVVA 240 GLKETIVAVK KVSPPTLPTL VDHVKALEEG REELPILKPI LPVCFYCKTN SHGVETNGMS 300 SLVECGRFAE DVNTKPMYAI TSRFAEGTKE RLAVEHALVH ELSSFGKTKS KEEKFAHGTV 360 TGAEEYEMEQ KRTRPSSHTP TSVVIQDVAE KVAEKKQHRK KPAAEKKQSY TAKLQEFKRI 420 RQVNQDNEDL GLFDAAATLS SFSIGMKTVS GNKSSGSGGS IKKMKNPSTP SAADDNNAAV 480 AEEGKIEYTK TGRIKKAKKK YKKSLVGILD PASERKRKYK EGVENFLKLA TIRAHMKEPD 540 DPNFLHRPAS LRTRVEPDAL TLFSGGKWRL VQGDDMAQAN EAMQEESARQ PPEENLSYEE 600 ALQRSQAEKE AKVLATQKGH EEDKKEDDEK SNPLRKDANL GAKDMMEKRG IQTAGEYAAV 660 ESKEDDGTSK NPLEEESAKV RKVTDDLPPG TKNVTKPTTR EDRTLQTMVS TETKTTKSSG 720 SKSKYSTEGM KFQRVDAPPD YEKPILQPKR KRFANNPSFG ITRAMIEQRF HMPLREAAKE 780 VGVGRTTFKR VLRLHGIERW PSQSLNAKKL TMKTITSLMS LPMSRMENNL DAQTLDSPSM 840 NATLEDKERD EEQKKQMESL SNGIFTKNSN GTNGEGRPKI PNIALNNNNI MNLILNGAAA 900 GISPEKSNLY SLGGNIAAGS GNKSLKTSDL RGMSDLRNYN ANVNALADNV TFGSLRGLSD 960 NTFNNNNNNT RA*

Sequence ? help Back to Top

Protein Sequence Length: 973 aa Download sequence Send to blast

MGKRELAQII AAQEWHDPTK WVSKKNKREE NAADEKKTRK TNVSSGSVKK VRKSTETTRK  60
TNTSSSANEK TKDKKEESQY SKSSKLSTRE TTTAVVASAR SKSVTPASEE EKKKLDDDDD  120
DPRRTFDLLG NVGAAATGKK RGTLTSAEEK LAKRKDIDEE EKEEEKDAGS KEPETTLRTR  180
VKVKEEEGSP PPPFPLRASA KKAPIVEKEK GENGVSHSPP KPTKVLDDEE KIKEDPMVVA  240
GLKETIVAVK KVSPPTLPTL VDHVKALEEG REELPILKPI LPVCFYCKTN SHGVETNGMS  300
SLVECGRFAE DVNTKPMYAI TSRFAEGTKE RLAVEHALVH ELSSFGKTKS KEEKFAHGTV  360
TGAEEYEMEQ KRTRPSSHTP TSVVIQDVAE KVAEKKQHRK KPAAEKKQSY TAKLQEFKRI  420
RQVNQDNEDL GLFDAAATLS SFSIGMKTVS GNKSSGSGGS IKKMKNPSTP SAADDNNAAV  480
AEEGKIEYTK TGRIKKAKKK YKKSLVGILD PASERKRKYK EGVENFLKLA TIRAHMKEPD  540
DPNFLHRPAS LRTRVEPDAL TLFSGGKWRL VQGDDMAQAN EAMQEESARQ PPEENLSYEE  600
ALQRSQAEKE AKVLATQKGH EEDKKEDDEK SNPLRKDANL GAKDMMEKRG IQTAGEYAAV  660
ESKEDDGTSK NPLEEESAKV RKVTDDLPPG TKNVTKPTTR EDRTLQTMVS TETKTTKSSG  720
SKSKYSTEGM KFQRVDAPPD YEKPILQPKR KRFANNPSFG ITRAMIEQRF HMPLREAAKE  780
VGVGRTTFKR VLRLHGIERW PSQSLNAKKL TMKTITSLMS LPMSRMENNL DAQTLDSPSM  840
NATLEDKERD EEQKKQMESL SNGIFTKNSN GTNGEGRPKI PNIALNNNNI MNLILNGAAA  900
GISPEKSNLY SLGGNIAAGS GNKSLKTSDL RGMSDLRNYN ANVNALADNV TFGSLRGLSD  960
NTFNNNNNNT RA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	494	502	KKAKKKYKK
2	497	517	KKKYKKSLVGILDPASERKRK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO082276	0.0	FO082276.1 Bathycoccus prasinos genomic : Chromosome_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007514378.1	0.0	nit2-like protein 2
TrEMBL	K8ETM6	0.0	K8ETM6_9CHLO; Nit2-like protein 2
STRING	XP_007514378.1	0.0	(Bathycoccus prasinos)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	7e-09	Nin-like family protein

Link Out ? help Back to Top
Entrez Gene	19016669