PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bathy03g01690

Organism

Bathycoccus prasinos

Taxonomic ID

41875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus

Family

SBP

Protein Properties

Length: 1435aa MW: 162052 Da PI: 8.1267

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bathy03g01690	genome	ORCAE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	57.7	3.1e-18	195	261	1	69
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakh 69 +C+v++Ce+ + y +r kvCe+h k+ +v+++g+ qrfCq+C+rfh+++ef +++r+C L+k Bathy03g01690 195 RCRVDKCEM--MCERVYGKRSKVCEMHLKMDEVFHEGMLQRFCQKCTRFHSIEEFKDKRRACALSLSKL 261 6****75..55688********************************************9888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.6E-18	192	254	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	16.973	193	268	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.93E-17	194	263	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.5E-17	196	261	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1435 aa Download sequence Send to blast
MEDEMATLLL QNHLRSKKKT KTKTKKRNKG SSSPSWEVDE YEWDQVNCVG RMKNEMDSFS 60 SGGEESGIPE EEEEKKLSSS SPAFGRAEEK QQKKQRLEDD DEEKLSLFDL NTTKNNPLFV 120 GVSRGAREIE ADERRFLIGQ QQKGKNITIV ASNEDGKRET RRNNNKNRNG GGSSANGSAK 180 VSSSSVANIK DKLVRCRVDK CEMMCERVYG KRSKVCEMHL KMDEVFHEGM LQRFCQKCTR 240 FHSIEEFKDK RRACALSLSK LAKVRAPNGV NGVGSSMMAA MAKRSGLNAD RSEMTSFNGN 300 DEGYQQHVPF DALIAQAKSN LTTTKLSQRQ NQLKQGEQQQ RNSNTSNSKS TSLIRKEPSD 360 DSNTCGNNDN TKHHKYQRQE QNHHEQHQQQ GQQKGQSTMR GFDVLDFAFP GMEEHDDAYL 420 NDFDSAGEPI RPQSNVLGLF SYDFTTGTLQ NRSRTNLHKD AEGESTGGDF SIVQEGARKH 480 LEEIGSDTYS GDVDEFFERQ QQQQKLYADK MTNFPDVHVS RAEIKISNRT PADISPAVGN 540 GIRQIFKDAA HIRVCAEPGC TKLTVDAVFP DIVRLKNGGS SVEINARELA QKAVDADRTL 600 DDVDASVTFR NQSATRKNGK WTVSDEKNSK MISFGRSLEA PWNAPFVICT NPSRNKKKNT 660 INNHKKGHQQ HENKGNLFRI SNIAENVVAH VRINGQILKD VKSLRRVGSD SSVLCFSVPQ 720 DYAEGVLSVD LVWSDEDSTH PDLVGKPAYD RFTTILTPDE KVADEIQSFI TEVHSLSPRV 780 ARSLRTHFET IFAEDFRSES FERPMFREMV KDITSWSLRN SFSYTVERLF EAQKRALEEF 840 QLSRKAHTAL ATTCKTYLHS ASLSGSSNLV KMVIIHGGDS DIFGSATTMV TLPNGSKECA 900 LHVASSDVFA HSSPLILELF LLGEENVRAF FTLKNSKGET SRDISSGHEP RGSLQHLYVQ 960 RCVQSALNVF WNVSKAIVDQ YLTSIAMKHR LFTQDALSCW TDAYEEVCGN SSGIIDDMKT 1020 NFVKDIAKSS KSTDFATITT APVADTDEGD IDVLLEENNE GVRLSLELAK VLSSCDHVVR 1080 EVCDRHFSHI RREMMNALNR PTARAIEEEE ENNEKKEVRG SSEFQSREDG SPPRCADSFL 1140 NDCFLHHRRK SRIRMELSTC AIHIETAARA RITQVQNAWH RLADYVAGLA ILSFDEPEME 1200 KLYVHEDSTE KISTDLFVHL FYSLAIFIAY VRFYRANQLF GIIFFPSTCT QLFKKFVAIC 1260 TLPALCYMNY FNPKFYVRHR EAINVVSRIL LSFLPSGNKQ LENVIMPVLI VLKVVMFRMS 1320 SALWPIRAER HACMVILGEI LNPTCVSSIL SVYAIIPMIL NIYFCFIIEL RQRRMFACKY 1380 GCIWLNQRWS VYGSKSGKWT HSKRRGASKV YTTKRASTNT TTTTTTPTTS NYAR*

Sequence ? help Back to Top

Protein Sequence Length: 1435 aa Download sequence Send to blast

MEDEMATLLL QNHLRSKKKT KTKTKKRNKG SSSPSWEVDE YEWDQVNCVG RMKNEMDSFS  60
SGGEESGIPE EEEEKKLSSS SPAFGRAEEK QQKKQRLEDD DEEKLSLFDL NTTKNNPLFV  120
GVSRGAREIE ADERRFLIGQ QQKGKNITIV ASNEDGKRET RRNNNKNRNG GGSSANGSAK  180
VSSSSVANIK DKLVRCRVDK CEMMCERVYG KRSKVCEMHL KMDEVFHEGM LQRFCQKCTR  240
FHSIEEFKDK RRACALSLSK LAKVRAPNGV NGVGSSMMAA MAKRSGLNAD RSEMTSFNGN  300
DEGYQQHVPF DALIAQAKSN LTTTKLSQRQ NQLKQGEQQQ RNSNTSNSKS TSLIRKEPSD  360
DSNTCGNNDN TKHHKYQRQE QNHHEQHQQQ GQQKGQSTMR GFDVLDFAFP GMEEHDDAYL  420
NDFDSAGEPI RPQSNVLGLF SYDFTTGTLQ NRSRTNLHKD AEGESTGGDF SIVQEGARKH  480
LEEIGSDTYS GDVDEFFERQ QQQQKLYADK MTNFPDVHVS RAEIKISNRT PADISPAVGN  540
GIRQIFKDAA HIRVCAEPGC TKLTVDAVFP DIVRLKNGGS SVEINARELA QKAVDADRTL  600
DDVDASVTFR NQSATRKNGK WTVSDEKNSK MISFGRSLEA PWNAPFVICT NPSRNKKKNT  660
INNHKKGHQQ HENKGNLFRI SNIAENVVAH VRINGQILKD VKSLRRVGSD SSVLCFSVPQ  720
DYAEGVLSVD LVWSDEDSTH PDLVGKPAYD RFTTILTPDE KVADEIQSFI TEVHSLSPRV  780
ARSLRTHFET IFAEDFRSES FERPMFREMV KDITSWSLRN SFSYTVERLF EAQKRALEEF  840
QLSRKAHTAL ATTCKTYLHS ASLSGSSNLV KMVIIHGGDS DIFGSATTMV TLPNGSKECA  900
LHVASSDVFA HSSPLILELF LLGEENVRAF FTLKNSKGET SRDISSGHEP RGSLQHLYVQ  960
RCVQSALNVF WNVSKAIVDQ YLTSIAMKHR LFTQDALSCW TDAYEEVCGN SSGIIDDMKT  1020
NFVKDIAKSS KSTDFATITT APVADTDEGD IDVLLEENNE GVRLSLELAK VLSSCDHVVR  1080
EVCDRHFSHI RREMMNALNR PTARAIEEEE ENNEKKEVRG SSEFQSREDG SPPRCADSFL  1140
NDCFLHHRRK SRIRMELSTC AIHIETAARA RITQVQNAWH RLADYVAGLA ILSFDEPEME  1200
KLYVHEDSTE KISTDLFVHL FYSLAIFIAY VRFYRANQLF GIIFFPSTCT QLFKKFVAIC  1260
TLPALCYMNY FNPKFYVRHR EAINVVSRIL LSFLPSGNKQ LENVIMPVLI VLKVVMFRMS  1320
SALWPIRAER HACMVILGEI LNPTCVSSIL SVYAIIPMIL NIYFCFIIEL RQRRMFACKY  1380
GCIWLNQRWS VYGSKSGKWT HSKRRGASKV YTTKRASTNT TTTTTTPTTS NYAR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	5e-12	196	259	11	76	squamosa promoter binding protein-like 4
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00060	PBM	Transfer from AT3G60030	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO082276	0.0	FO082276.1 Bathycoccus prasinos genomic : Chromosome_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007513950.1	0.0	predicted protein
TrEMBL	K8EBS4	0.0	K8EBS4_9CHLO; Uncharacterized protein
STRING	XP_007513950.1	0.0	(Bathycoccus prasinos)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	1e-14	squamosa promoter binding protein-like 4

Link Out ? help Back to Top
Entrez Gene	19016707