PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy04g01170
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 214aa    MW: 25613 Da    PI: 8.2311
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy04g01170genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H226.81.3e-0878100123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  C k+F  +s+L rH+rtH
  Bathy04g01170  78 HECDVCEKVFAKPSDLARHMRTH 100
                    78********************9 PP
2zf-C2H2292.5e-09106128123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+Fs++ nLk+H+r H
  Bathy04g01170 106 YECDVCEKRFSDSGNLKKHMRIH 128
                    99*******************99 PP
3zf-C2H226.81.2e-08134156123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++snLk+H r H
  Bathy04g01170 134 YECDVCEKRFRTSSNLKVHARIH 156
                    99*******************99 PP
4zf-C2H224.56.9e-08162184123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++  LkrH+r H
  Bathy04g01170 162 YECDVCEKRFRHSQGLKRHMRIH 184
                    99*******************99 PP
5zf-C2H218.84.4e-06190213123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    ++C+ C k++++   Lk H+rt H
  Bathy04g01170 190 FECHVCEKRYRHATGLKYHMRTqH 213
                    89********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.12E-1977128No hitNo description
Gene3DG3DSA:3.30.160.602.7E-1678107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.5E-478100IPR015880Zinc finger, C2H2-like
PfamPF000961.1E-678100IPR007087Zinc finger, C2H2
PROSITE profilePS5015715.64678105IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM003551.7E-5106128IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.602106133IPR007087Zinc finger, C2H2
PfamPF000964.6E-7106128IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-18108127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.94E-24115171No hitNo description
Gene3DG3DSA:3.30.160.603.5E-19128152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.4E-4134156IPR015880Zinc finger, C2H2-like
PfamPF000962.1E-6134156IPR007087Zinc finger, C2H2
PROSITE profilePS5015716.186134161IPR007087Zinc finger, C2H2
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-18153181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.12E-18156208No hitNo description
SMARTSM003551.3E-4162184IPR015880Zinc finger, C2H2-like
PfamPF000962.0E-5162184IPR007087Zinc finger, C2H2
PROSITE profilePS5015716.228162189IPR007087Zinc finger, C2H2
PROSITE patternPS000280164184IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-12182211IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.014190213IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.97190213IPR007087Zinc finger, C2H2
PROSITE patternPS000280192213IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSRRKNKHPK RAVNVETVVV ASAVEEREEE EEEEEEEEPP VLCLRIPDED EVVFEIFEQK  60
EIRKEKTTTT RGKRKRGHEC DVCEKVFAKP SDLARHMRTH TNEKPYECDV CEKRFSDSGN  120
LKKHMRIHTN EKPYECDVCE KRFRTSSNLK VHARIHTNEK PYECDVCEKR FRHSQGLKRH  180
MRIHTNERPF ECHVCEKRYR HATGLKYHMR TQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A3e-36782114188Aart
2i13_B3e-36782114188Aart
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822750.0FO082275.1 Bathycoccus prasinos genomic : Chromosome_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007513494.11e-153PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
TrEMBLK8EDG41e-152K8EDG4_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007513494.11e-153(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.22e-14C2H2 family protein