PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy04g01230
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 202aa    MW: 24060.2 Da    PI: 8.9758
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy04g01230genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H227.48.2e-091032123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C ksF+r+++Lk+H r H
  Bathy04g01230 10 YECGVCEKSFRRSDDLKKHTRIH 32
                   99*******************99 PP
2zf-C2H228.24.6e-093860123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C  C k+Fsr + L++H+r H
  Bathy04g01230 38 YECDVCEKRFSRADALQSHMRIH 60
                   99*******************99 PP
3zf-C2H229.12.3e-096688123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C  C+k F+++s+Lk+H+r H
  Bathy04g01230 66 YECDVCDKAFRHSSSLKVHMRIH 88
                   99*******************99 PP
4zf-C2H224.28.8e-0894116123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++  Lk H+r H
  Bathy04g01230  94 YECDVCEKRFTQSGALKYHMRIH 116
                    99*******************99 PP
5zf-C2H223.91.1e-07122144123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++ +L++H rtH
  Bathy04g01230 122 YECDVCEKRFRTSGSLTQHKRTH 144
                    99********************9 PP
6zf-C2H229.32e-09150172123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC  C k+F++++nLk+H+rtH
  Bathy04g01230 150 YKCDVCEKRFRTSDNLKTHMRTH 172
                    9*********************9 PP
7zf-C2H220.41.3e-06178200123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC  C  +Fs+  nL++H r H
  Bathy04g01230 178 YKCVVCEARFSQLGNLQSHVRIH 200
                    9*********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.6E-20456No hitNo description
Gene3DG3DSA:3.30.160.604.2E-16731IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015716.291037IPR007087Zinc finger, C2H2
SMARTSM003559.7E-41032IPR015880Zinc finger, C2H2-like
PfamPF000961.0E-61032IPR007087Zinc finger, C2H2
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.7E-193258IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015715.7713865IPR007087Zinc finger, C2H2
SMARTSM003551.9E-53860IPR015880Zinc finger, C2H2-like
PfamPF000961.5E-63860IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
SuperFamilySSF576672.49E-2447103No hitNo description
Gene3DG3DSA:3.30.160.607.0E-185984IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015716.9146693IPR007087Zinc finger, C2H2
SMARTSM003555.3E-56688IPR015880Zinc finger, C2H2-like
PfamPF000963.1E-76688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.0E-2085114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.0E-594116IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.18694121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
SuperFamilySSF576677.3E-24103159No hitNo description
PfamPF134652.6E-10108133IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-17115141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015716.103122149IPR007087Zinc finger, C2H2
SMARTSM003552.2E-4122144IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-19142170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.2E-20144196No hitNo description
PfamPF139122.7E-7150172IPR007087Zinc finger, C2H2
SMARTSM003551.8E-5150172IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.29150177IPR007087Zinc finger, C2H2
PROSITE patternPS000280152172IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.7E-16171200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.219178201IPR007087Zinc finger, C2H2
PfamPF138943.4E-4178201No hitNo description
SMARTSM003550.0015178200IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280180201IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MRTHTNERPY ECGVCEKSFR RSDDLKKHTR IHTNEKPYEC DVCEKRFSRA DALQSHMRIH  60
ANEKPYECDV CDKAFRHSSS LKVHMRIHTN EKPYECDVCE KRFTQSGALK YHMRIHTNEK  120
PYECDVCEKR FRTSGSLTQH KRTHTNEKPY KCDVCEKRFR TSDNLKTHMR THTNEKPYKC  180
VVCEARFSQL GNLQSHVRIH H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A7e-5512006188Aart
2i13_B7e-5512006188Aart
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822750.0FO082275.1 Bathycoccus prasinos genomic : Chromosome_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007513606.11e-148PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
SwissprotA6NK533e-72ZN233_HUMAN; Zinc finger protein 233
TrEMBLK8EDN61e-146K8EDN6_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007513606.11e-147(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.27e-13C2H2 family protein