PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy04g01670
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 228aa    MW: 27561.8 Da    PI: 6.509
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy04g01670genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H227.57.5e-0993115123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C+ C k+F+++s+L +H+rtH
  Bathy04g01670  93 HECGVCEKVFTSPSLLATHMRTH 115
                    78********************9 PP
2zf-C2H225.82.7e-08121143123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++ +Lk+H+r H
  Bathy04g01670 121 YECDVCEKRFTQSGSLKTHMRIH 143
                    99*******************99 PP
3zf-C2H224.75.9e-08148170123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  C k+F+   nLk+H+r H
  Bathy04g01670 148 FECDVCQKRFTLAGNLKVHMRIH 170
                    89*******************99 PP
4zf-C2H223.61.3e-07176198123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++ +Lk+H r H
  Bathy04g01670 176 YECDVCEKRFRTSGHLKSHKRIH 198
                    99*******************99 PP
5zf-C2H222.23.6e-07204227123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C  C k+F+++ +Lk H r  H
  Bathy04g01670 204 YECDVCEKRFRTSGQLKIHVRIqH 227
                    99*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-1291115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.77E-1992143No hitNo description
PROSITE profilePS5015714.48293120IPR007087Zinc finger, C2H2
SMARTSM003557.8E-493115IPR015880Zinc finger, C2H2-like
PfamPF000968.7E-793115IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-19116146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.3E-5121143IPR015880Zinc finger, C2H2-like
PfamPF000963.7E-6121143IPR007087Zinc finger, C2H2
PROSITE profilePS5015714.087121148IPR007087Zinc finger, C2H2
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
SuperFamilySSF576676.27E-20130185No hitNo description
Gene3DG3DSA:3.30.160.604.1E-16148176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015715.604148175IPR007087Zinc finger, C2H2
SMARTSM003552.3E-4148170IPR015880Zinc finger, C2H2-like
PfamPF000962.1E-5148170IPR007087Zinc finger, C2H2
PROSITE patternPS000280150170IPR007087Zinc finger, C2H2
SuperFamilySSF576677.43E-20170222No hitNo description
PROSITE profilePS5015716.124176203IPR007087Zinc finger, C2H2
PfamPF128740.001176197No hitNo description
SMARTSM003554.4E-4176198IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-14177194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280178198IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.5E-15195225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF138945.7E-4204227No hitNo description
SMARTSM003552.8E-4204227IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.801204227IPR007087Zinc finger, C2H2
PROSITE patternPS000280206227IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MRRKNEHPQR AMHAKTMVTS DREEREREEE RRRRRQREQQ ALLMVWCDVE REREREEEEE  60
EEEEEDDDED EDDDEEDDEE MTVRKGAKRK RGHECGVCEK VFTSPSLLAT HMRTHTKEKP  120
YECDVCEKRF TQSGSLKTHM RIHTNEMFEC DVCQKRFTLA GNLKVHMRIH TNEKPYECDV  180
CEKRFRTSGH LKSHKRIHTN EKPYECDVCE KRFRTSGQLK IHVRIQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A1e-319322522188Aart
2i13_B1e-319322522188Aart
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12433REREEERRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822750.0FO082275.1 Bathycoccus prasinos genomic : Chromosome_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007513531.11e-164unnamed protein product
SwissprotQ611167e-40ZN235_MOUSE; Zinc finger protein 235
TrEMBLK8EDH41e-162K8EDH4_9CHLO; Unnamed protein product
STRINGXP_007513531.11e-163(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.27e-11C2H2 family protein