PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy04g02730
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 217aa    MW: 25627 Da    PI: 8.267
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy04g02730genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H225.43.5e-0881103123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  C k+F ++s L rH+r H
  Bathy04g02730  81 HECDVCEKVFVTPSKLARHMRIH 103
                    78*******************99 PP
2zf-C2H227.39e-09109131123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++ +Lk+H+rtH
  Bathy04g02730 109 YECDVCEKRFTQSGDLKTHMRTH 131
                    99********************9 PP
3zf-C2H2285.4e-09137159123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++s+Lk+H+r H
  Bathy04g02730 137 YECDVCEKRFTQSSSLKSHMRIH 159
                    99*******************99 PP
4zf-C2H226.71.4e-08165187123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+r+ +L++H+r H
  Bathy04g02730 165 YECDVCEKRFRRSGDLQTHMRIH 187
                    99*******************98 PP
5zf-C2H228.24.4e-09193216123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C  C k+Fs++snLk+H+r+ H
  Bathy04g02730 193 YECDECEKRFSQSSNLKTHMRNfH 216
                    99*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.05E-1980131No hitNo description
SMARTSM003551.4E-481103IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-1681109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015715.27281108IPR007087Zinc finger, C2H2
PfamPF000962.6E-681103IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM003554.2E-5109131IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.186109136IPR007087Zinc finger, C2H2
PfamPF000961.1E-6109131IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-16110128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
SuperFamilySSF576679.63E-25118174No hitNo description
Gene3DG3DSA:3.30.160.601.9E-20129156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.8E-5137159IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.934137164IPR007087Zinc finger, C2H2
PfamPF000967.3E-7137159IPR007087Zinc finger, C2H2
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.7E-19157184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.01E-21159211No hitNo description
SMARTSM003553.1E-5165187IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015715.958165192IPR007087Zinc finger, C2H2
PfamPF000961.7E-6165187IPR007087Zinc finger, C2H2
PROSITE patternPS000280167189IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-17185213IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.3E-4193216IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.025193216IPR007087Zinc finger, C2H2
PfamPF000961.1E-6193216IPR007087Zinc finger, C2H2
PROSITE patternPS000280195216IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MTGSSRRKNK HPKRAENVKT VVVVRKGGDR EEEGDDDDDV ERLRRMLMCV PCDDDVVEQN  60
HQMREEETAC IAKGVKRKRG HECDVCEKVF VTPSKLARHM RIHTNEKPYE CDVCEKRFTQ  120
SGDLKTHMRT HTKEKPYECD VCEKRFTQSS SLKSHMRIHT NEKPYECDVC EKRFRRSGDL  180
QTHMRIHTHE KPYECDECEK RFSQSSNLKT HMRNFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A6e-414021415188Aart
2i13_B6e-414021415188Aart
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822750.0FO082275.1 Bathycoccus prasinos genomic : Chromosome_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007513685.11e-158PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
TrEMBLK8EUR11e-157K8EUR1_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007513685.11e-158(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.26e-13C2H2 family protein