PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy04g03240
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 152aa    MW: 17752 Da    PI: 6.8877
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy04g03240genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.81.2e-077294123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C  C k+F ++s L  H+r+H
  Bathy04g03240 72 HECDVCEKVFVSPSKLAIHMRMH 94
                   78********************9 PP
2zf-C2H226.22e-08100122123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C+k F+ ++nLk+H r+H
  Bathy04g03240 100 YECDVCDKAFRESENLKVHVRMH 122
                    99********************9 PP
3zf-C2H227.38.7e-09128151123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C  C k+Fs++snL++H r+ H
  Bathy04g03240 128 YECDVCEKRFSQSSNLQNHARNvH 151
                    99*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.68E-1169103No hitNo description
SMARTSM003554.2E-47294IPR015880Zinc finger, C2H2-like
PfamPF000969.2E-67294IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-1572101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.3787299IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SuperFamilySSF576674.57E-2194146No hitNo description
SMARTSM003555.4E-4100122IPR015880Zinc finger, C2H2-like
PfamPF000965.1E-6100122IPR007087Zinc finger, C2H2
PROSITE profilePS5015716.145100127IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-17102121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-15122148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.0E-4128151IPR015880Zinc finger, C2H2-like
PfamPF000964.4E-6128151IPR007087Zinc finger, C2H2
PROSITE profilePS5015713.526128151IPR007087Zinc finger, C2H2
PROSITE patternPS000280130151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MVFLSFHTTH KDRHKQKEVG EEEGDDDDVE RLRRILTCVP CEDDVVTKQN HQMREEETAC  60
IAKGVSLRKR GHECDVCEKV FVSPSKLAIH MRMHTKEKPY ECDVCDKAFR ESENLKVHVR  120
MHTNEKPYEC DVCEKRFSQS SNLQNHARNV H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lvr_A1e-2174149681Zinc finger and BTB domain-containing protein 17
2lvt_A1e-2174149681Zinc finger and BTB domain-containing protein 17
2lvu_A1e-2174149681Zinc finger and BTB domain-containing protein 17
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822750.0FO082275.1 Bathycoccus prasinos genomic : Chromosome_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007513700.11e-108PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
SwissprotQ8NB502e-23ZFP62_HUMAN; Zinc finger protein 62 homolog
TrEMBLK8EUS31e-107K8EUS3_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007513700.11e-108(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.22e-08C2H2 family protein