PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy04g04790
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family NF-YA
Protein Properties Length: 376aa    MW: 42341.1 Da    PI: 8.9951
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy04g04790genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA84.41.7e-26231301358
      CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekk...............ldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    p+YVNaKQy++Il+RR++Rak e + +               + e++rkpy+heSRh+hA rR Rg+gGrF
  Bathy04g04790 231 PVYVNAKQYEAILRRRAARAKHELKYNkigavfsptggkkngTGEEKRKPYMHESRHNHARRRIRGPGGRF 301
                    9**********************96556**************889*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-22227304IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115227.917228304IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.8E-22231301IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MNNKSSNTTT NVGGHSIVEN NADFEESGKN IVLNAAAFAQ AYAYSAYDDI EKRLEIKKDN  60
ESRLQRKNTN EKTKTKTKKK GSEESLLEMK ESVEDVDDED TDDDETTERQ REEEDEEEMV  120
KRRRMEESHA QTTSAMNGGV DGMVAAAAAT ATLYNHHPSS SFQAQYQMPS MQPPPPPNVP  180
LVAQQYLLQP TALLVANDTN NQAQEHHQEQ QQQQHLVMAA AAAAAAAAAP PVYVNAKQYE  240
AILRRRAARA KHELKYNKIG AVFSPTGGKK NGTGEEKRKP YMHESRHNHA RRRIRGPGGR  300
FLTQKELLDG LGGEEAKQQA MKRKEENEKR EKERERKKQL RQKKKEEQKV MMMEKRRNAE  360
KKGATGVDEV VDAEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A3e-15231306464HAPB protein
4g92_A3e-15231306464HAPB protein
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822750.0FO082275.1 Bathycoccus prasinos genomic : Chromosome_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007513481.10.0Hap2-like protein
TrEMBLK8EDD10.0K8EDD1_9CHLO; Hap2-like protein
STRINGXP_007513481.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP954144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.32e-15nuclear factor Y, subunit A1