PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy05g03070
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 183aa    MW: 22095 Da    PI: 8.925
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy05g03070genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.51.2e-067597123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C  C k+ + +s L  H+rtH
  Bathy05g03070 75 YECDVCEKVLRYPSKLAEHMRTH 97
                   99********************9 PP
2zf-C2H227.38.7e-09103125123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++s L++H+r H
  Bathy05g03070 103 YECDVCEKRFRHSSALQNHMRIH 125
                    99*******************99 PP
3zf-C2H223.41.5e-07131153123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++ +L++H rtH
  Bathy05g03070 131 YECDVCEKRFRQSGSLTQHKRTH 153
                    99********************9 PP
4zf-C2H224.47.5e-08159182123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C  C k+F+ +snL+rH rt H
  Bathy05g03070 159 YQCDVCEKRFRISSNLRRHVRTqH 182
                    9*********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.46E-1973125No hitNo description
Gene3DG3DSA:3.30.160.601.8E-1474103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139129.2E-47499IPR007087Zinc finger, C2H2
SMARTSM003550.00177597IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.37875102IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM003555.3E-5103125IPR015880Zinc finger, C2H2-like
PfamPF000962.8E-6103125IPR007087Zinc finger, C2H2
PROSITE profilePS5015716.456103130IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.3E-16104122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
SuperFamilySSF576673.75E-24112168No hitNo description
Gene3DG3DSA:3.30.160.602.9E-18123150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.6E-5131153IPR007087Zinc finger, C2H2
SMARTSM003554.5E-4131153IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.332131158IPR007087Zinc finger, C2H2
PROSITE patternPS000280133153IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-15151180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.549159182IPR007087Zinc finger, C2H2
SMARTSM003556.6E-4159182IPR015880Zinc finger, C2H2-like
PfamPF000961.1E-5159182IPR007087Zinc finger, C2H2
PROSITE patternPS000280161182IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MRKKNPHPQR AVNAKTVVVA SDREEREERL LKREEEERAL LRLRIPDDEE EEEDEQIREE  60
EMTPVRKGAK RKRAYECDVC EKVLRYPSKL AEHMRTHTKE KPYECDVCEK RFRHSSALQN  120
HMRIHTNEKP YECDVCEKRF RQSGSLTQHK RTHTNEKPYQ CDVCEKRFRI SSNLRRHVRT  180
QH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A3e-277318020188Aart
2i13_B3e-277318020188Aart
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822740.0FO082274.1 Bathycoccus prasinos genomic : chromosome_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007513247.11e-129PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
SwissprotP394134e-36AEF1_DROME; Adult enhancer factor 1
SwissprotQ49AA01e-34ZFP69_HUMAN; Zinc finger protein 69 homolog
TrEMBLK8EWG71e-128K8EWG7_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007513247.11e-129(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-11C2H2 family protein