PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy05g03660
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family MYB_related
Protein Properties Length: 184aa    MW: 19371.8 Da    PI: 12.0949
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy05g03660genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-083178345
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwq 45
                      WT+ E   l  +v+++G+g+Wk+I          ++R+  ++k++w+
    Bathy05g03660 31 VWTEPEKVALTAGVAKYGPGQWKKILDDPAfgpklTNRSNVDLKDKWR 78
                     6***************************9999***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-112679IPR009057Homeodomain-like
SuperFamilySSF466898.97E-132783IPR009057Homeodomain-like
SMARTSM007170.00232883IPR001005SANT/Myb domain
CDDcd116606.18E-163078No hitNo description
PROSITE profilePS500906.7713278IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MAKRTKSARK AAKSKPSAPR QRTPARKGYK VWTEPEKVAL TAGVAKYGPG QWKKILDDPA  60
FGPKLTNRSN VDLKDKWRGA SPTPTKKTKT PVAVSKATKP SSAKKLAFTK SPPIGVRRSP  120
SKTRPSYTKT KPAPPPRRPS SARKAAKPVA AKKPSAPAKK ASSPAPAKKS APAKASSGGC  180
VIM*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822740.0FO082274.1 Bathycoccus prasinos genomic : chromosome_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007513164.11e-119unknown
TrEMBLK8EF121e-117K8EF12_9CHLO; Uncharacterized protein
STRINGXP_007513164.11e-118(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3956912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.14e-16MYB_related family protein