PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy07g01350
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 184aa    MW: 21838.4 Da    PI: 6.8299
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy07g01350genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H224.28.6e-087698123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C  C k+F r+s+L  H+r H
  Bathy07g01350 76 HECDLCEKVFDRPSSLAIHMRIH 98
                   78*******************99 PP
2zf-C2H225.24.1e-08104126123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C+k F ++ +Lk+H+r H
  Bathy07g01350 104 YECDVCDKAFHTSGHLKSHMRIH 126
                    99*******************99 PP
3zf-C2H226.21.9e-08132154123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C+ C k+Fs+  nLk+H+r H
  Bathy07g01350 132 HECEVCEKRFSQAGNLKTHMRIH 154
                    78*******************99 PP
4zf-C2H226.81.3e-08160183123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C  C+k F+++ nLkrH r+ H
  Bathy07g01350 160 YECDVCDKAFRDSGNLKRHARNvH 183
                    99*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.19E-1975126No hitNo description
SMARTSM003556.0E-47698IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-1576104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015715.08576103IPR007087Zinc finger, C2H2
PfamPF000967.6E-67698IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
SMARTSM003555.4E-5104126IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.415104131IPR007087Zinc finger, C2H2
PfamPF000964.0E-6104126IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-15105122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
SuperFamilySSF576673.77E-24112169No hitNo description
Gene3DG3DSA:3.30.160.608.3E-20123152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.0E-4132154IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015715.563132159IPR007087Zinc finger, C2H2
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
PfamPF134652.5E-10146169IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-15153180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.5E-4160183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.422160183IPR007087Zinc finger, C2H2
PROSITE patternPS000280162183IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MVRQKNPHPK RAENARTAVV ASDREEREAR EFREEEEEER VLCLTIPDYD DDDEMDEQIR  60
EEEMTVRKGW KRKRGHECDL CEKVFDRPSS LAIHMRIHTN ERPYECDVCD KAFHTSGHLK  120
SHMRIHTNEK PHECEVCEKR FSQAGNLKTH MRIHTKEKPY ECDVCDKAFR DSGNLKRHAR  180
NVH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A2e-26761834188Aart
2i13_B2e-26761834188Aart
2m0d_A5e-27761802111Zinc finger and BTB domain-containing protein 17
2m0e_A5e-27761802111Zinc finger and BTB domain-containing protein 17
2m0f_A5e-27761802111Zinc finger and BTB domain-containing protein 17
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822720.0FO082272.1 Bathycoccus prasinos genomic : Chromosome_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007512266.11e-133PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
TrEMBLK8FI141e-132K8FI14_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007512266.11e-132(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-11C2H2 family protein