PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy08g04030
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family SBP
Protein Properties Length: 450aa    MW: 51132.7 Da    PI: 8.5294
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy08g04030genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP361.8e-11110181272
                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEET...TEEEEE-TTTSSEEETTT--SS--S-STTTT----- CS
            SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvs...gleqrfCqqCsrfhelsefDeekrsCrrrLakhner 72 
                    C+v +Ce+  +  ++y+ r k C+ + +a++v+v+   ++  rfCq+C++fh ++ f+ ++++C+  L+k  e+
  Bathy08g04030 110 CKVYACEEVCE--NKYQIRSKTCRSCLNAKEVFVEkgdEMASRFCQKCTKFHGVDMFEGGRKACKMSLKKVQEK 181
                    99999987554..57*****************9862225789***********************999887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.5E-11107172IPR004333Transcription factor, SBP-box
PROSITE profilePS5114111.75107185IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-8108183IPR004333Transcription factor, SBP-box
PfamPF031102.2E-13110183IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MSEDDDEERN ELTLRRSLFE ESDLLFSNQQ PSTTVCRLAS NPTNPSPPER VTTFTNTASK  60
KTTKKTKKKK TNDDKEEVQQ QQQQQQQNPN NNEKSSRSSM ENELVVKVAC KVYACEEVCE  120
NKYQIRSKTC RSCLNAKEVF VEKGDEMASR FCQKCTKFHG VDMFEGGRKA CKMSLKKVQE  180
KNKVIFAKQK MLLKEWEEAM TRRTTTTTTT TAVKRSTKAK KEKKKTKSQE NLSEESKDRN  240
TITTSDTQTM NNRKTMILKP CTMDSLYSTD EGHESKAAAA GAPIVTKTMG RDQQQSWPAI  300
VAVNRVDRLL EAIKAEKRKE SLLGLNLVKR RKRGEEEDED LVMAAAREEE GRREEEEKEE  360
EEGIDDPMEG EEGEDDDERK EHTDNAKKPP KIKKLPSLVS NILVRSITPT LSGVVRSITP  420
TLYREAMESK LNEFRGLSSK LSPPPPPKD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316332KRKESLLGLNLVKRRKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822710.0FO082271.1 Bathycoccus prasinos genomic : Chromosome_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007511710.10.0predicted protein
TrEMBLK8EII70.0K8EII7_9CHLO; Uncharacterized protein
STRINGXP_007511710.10.0(Bathycoccus prasinos)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.12e-06SBP family protein