PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy08g04690
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family NF-YB
Protein Properties Length: 138aa    MW: 15240.5 Da    PI: 4.6756
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy08g04690genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB56.66.3e-18396396
          NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96
                   ++++ lP a + +++   +P+  ++s+d ++++ e  +ef+  ++sea+d + +e++ ti+++ ++ al +lGf+d++++ ++ ++  +++ ++
  Bathy08g04690  3 NDEQSLPKATINKMISDSIPEGLRLSNDLRDLLLESCTEFVLSISSEATDISTKENKTTITPEHVIAALKKLGFDDFIDECTKEMEIEKDVAKD 96
                   67899**************************************************************************998877766666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.8E-322134IPR009072Histone-fold
SuperFamilySSF471134.19E-314132IPR009072Histone-fold
PfamPF008082.9E-14771IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MENDEQSLPK ATINKMISDS IPEGLRLSND LRDLLLESCT EFVLSISSEA TDISTKENKT  60
TITPEHVIAA LKKLGFDDFI DECTKEMEIE KDVAKDKRIE KKKKKDMGMS AEEAMALQAK  120
MFAEAKARMA GQQQGGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B4e-28312611133Transcription Regulator NC2 beta chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196103KRIEKKKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822710.0FO082271.1 Bathycoccus prasinos genomic : Chromosome_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007511488.15e-95predicted protein
TrEMBLK8EHW51e-93K8EHW5_9CHLO; Uncharacterized protein
STRINGXP_007511488.12e-94(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP24221515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.43e-25nuclear factor Y, subunit B13