PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy09g03710
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family MYB
Protein Properties Length: 681aa    MW: 78275 Da    PI: 9.6203
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy09g03710genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-16275320148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      + +W++eEde l+++v+++G++ W++++r ++ gR +kqc++rw+ +l
    Bathy09g03710 275 KPKWSKEEDEELIRLVAKFGTR-WSSVSRALN-GRVGKQCRERWNHHL 320
                      579*******************.*********.***********9886 PP
2Myb_DNA-binding50.64.3e-16326368145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg W+t E+ +l++++k lG++ W+ Ia+ ++ gRt++++k++w+
    Bathy09g03710 326 RGLWSTKEESKLIELHKVLGNK-WADIAKGLP-GRTENSVKNHWN 368
                      788*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.46270320IPR017930Myb domain
SMARTSM007172.4E-15274322IPR001005SANT/Myb domain
SuperFamilySSF466895.62E-26275367IPR009057Homeodomain-like
CDDcd001674.78E-11277320No hitNo description
Gene3DG3DSA:1.10.10.602.7E-21277326IPR009057Homeodomain-like
PfamPF139211.8E-17278337No hitNo description
PROSITE profilePS5129425.321321375IPR017930Myb domain
SMARTSM007171.1E-14325373IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-20327373IPR009057Homeodomain-like
CDDcd001671.97E-9329371No hitNo description
Gene3DG3DSA:2.20.25.801.3E-17448513IPR003657WRKY domain
SuperFamilySSF1182904.71E-16456513IPR003657WRKY domain
SMARTSM007741.2E-15457512IPR003657WRKY domain
PfamPF031062.0E-15459510IPR003657WRKY domain
PROSITE profilePS5081115.422459513IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MRGEENEEEN ETAKRRKRND DDDVQITCAP EEEEEEEEEE LLKRGRPLAW GVAKTRTPFR  60
EVRFEEGRQY ECRIPSLLAA FEQIEQKLKK KKPISTDPKT FDPDTILKID EDCSEKAISL  120
GYKLGTIKHS AYALLAMAGP GGMKAANIVS IAKRLDLYNP GTCKTPNGSV TAVLSQGAHF  180
QRIAPGRYAL KEHVTDELRG GDVWHPKTKE TERDDVSVID LVRSGQLRPS FRGSSEAVTN  240
DDIVNVKSFL EKNQNKHSLT LQETPEVVRN HFGPKPKWSK EEDEELIRLV AKFGTRWSSV  300
SRALNGRVGK QCRERWNHHL RPDIRRGLWS TKEESKLIEL HKVLGNKWAD IAKGLPGRTE  360
NSVKNHWNAT LRRGRTDGTP SELRVYATTQ TKGRGPIGRP RSRHNSPKDD EREALKEKIL  420
SASVQEMVSA NTDDSSEEEN GEEETEKHDT MENPHKTLDG FKWRKYGRKN IKLASSQVTR  480
SYYRCTRPNC PARKQVDENG LVKYENAHNH ERPSLLSRKK EQKQQQRVLV DMEVKRAHEL  540
LREHYKNKLS HFMLEANVYF KNKIKLERNL HELTIAKANR RISQMILDLT LARKENEKLK  600
NIFSDGREKL TPRDGEERGE PPAKPETPTT TKDGNDDRGD KKARKKEEEQ DEDFQISNLV  660
SNYSPEKRKE WAIRHLVTKG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-342653733106B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822700.0FO082270.1 Bathycoccus prasinos genomic : Chromosome_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007510945.10.0predicted protein
TrEMBLK8F3550.0K8F355_9CHLO; Uncharacterized protein
STRINGXP_007510945.10.0(Bathycoccus prasinos)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-37myb domain protein 98