PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy09g03960
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 340aa    MW: 40533.2 Da    PI: 8.6016
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy09g03960genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.13.9e-0781103123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  C k+F  +s+L +H+rtH
  Bathy09g03960  81 HECDVCEKVFGYSSQLAVHMRTH 103
                    78********************9 PP
2zf-C2H225.63e-08109131123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C+ C k+F++++ Lk H+r H
  Bathy09g03960 109 YECGVCEKRFRDSYALKIHMRIH 131
                    99*******************99 PP
3zf-C2H223.61.3e-07137159123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C+k+F++   L++H+r H
  Bathy09g03960 137 YECDVCKKRFTQAGGLQTHMRIH 159
                    99*******************99 PP
4zf-C2H213.90.00016165187123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C + F+++  Lk H  +H
  Bathy09g03960 165 YECDVCEMKFRHSNALKIHKFRH 187
                    99*****************9988 PP
5zf-C2H228.14.7e-09204226123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+Fs +snL++H+r H
  Bathy09g03960 204 YECDVCEKRFSESSNLQSHMRIH 226
                    99*******************99 PP
6zf-C2H227.29.5e-09232254123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++ nL++H+r H
  Bathy09g03960 232 YECDVCEKRFTTSGNLTNHMRIH 254
                    99*******************99 PP
7zf-C2H226.91.2e-08260282123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C+k F++  nLk+H+r H
  Bathy09g03960 260 YECDVCDKAFRQLGNLKVHMRIH 282
                    99*******************99 PP
8zf-C2H217.79.8e-06288310123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  C + F+++  Lk+H+r H
  Bathy09g03960 288 HECDVCEMKFRHSNALKTHMRIH 310
                    78*******************99 PP
9zf-C2H218.17.3e-06316338123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C + F++  +L++H rtH
  Bathy09g03960 316 YECDVCEMKFRQYGTLQSHKRTH 338
                    99********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.001481103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.9681108IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-88198IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000962.3E-581103IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SuperFamilySSF576675.81E-2389146No hitNo description
Gene3DG3DSA:3.30.160.601.3E-1899128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015715.251109136IPR007087Zinc finger, C2H2
SMARTSM003552.4E-4109131IPR015880Zinc finger, C2H2-like
PfamPF000965.8E-6109131IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-18129157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.6E-19131183No hitNo description
SMARTSM003553.8E-5137159IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015715.978137164IPR007087Zinc finger, C2H2
PfamPF000961.5E-5137159IPR007087Zinc finger, C2H2
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.0E-12158188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.035165187IPR015880Zinc finger, C2H2-like
PfamPF128740.025165183No hitNo description
PROSITE profilePS5015711.094165203IPR007087Zinc finger, C2H2
PROSITE patternPS000280167187IPR007087Zinc finger, C2H2
SuperFamilySSF576671.15E-22185241No hitNo description
Gene3DG3DSA:3.30.160.601.5E-18189222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.5E-5204226IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.207204231IPR007087Zinc finger, C2H2
PfamPF000962.7E-6204226IPR007087Zinc finger, C2H2
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-18223250IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015716.373232259IPR007087Zinc finger, C2H2
SMARTSM003553.0E-5232254IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
SuperFamilySSF576671.29E-23241297No hitNo description
PfamPF134652.2E-10246270IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-20251280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.9E-5260282IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.311260287IPR007087Zinc finger, C2H2
PROSITE patternPS000280262282IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.8E-16281308IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.65E-17282334No hitNo description
SMARTSM003550.0019288310IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.503288315IPR007087Zinc finger, C2H2
PfamPF128740.0032289310No hitNo description
PROSITE patternPS000280290310IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-13309338IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0013316338IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.905316339IPR007087Zinc finger, C2H2
PfamPF139120.032316338IPR007087Zinc finger, C2H2
PROSITE patternPS000280318338IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MRRRRKNPHP KRAVNARTVL KCDILEERGG EEEEKEEQPP VLCLKIPDED EVVFEIFEQK  60
EMRKEMTTTT KGVKRKKTQQ HECDVCEKVF GYSSQLAVHM RTHTNERPYE CGVCEKRFRD  120
SYALKIHMRI HTNEKPYECD VCKKRFTQAG GLQTHMRIHT NEKPYECDVC EMKFRHSNAL  180
KIHKFRHSNA LKIHKRIHTN EKPYECDVCE KRFSESSNLQ SHMRIHTNEN PYECDVCEKR  240
FTTSGNLTNH MRIHTNEKPY ECDVCDKAFR QLGNLKVHMR IHTNEKPHEC DVCEMKFRHS  300
NALKTHMRIH TNEKPYECDV CEMKFRQYGT LQSHKRTHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5v3j_E2e-60813394284Zinc finger protein 568
5v3j_F2e-60813394284Zinc finger protein 568
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822700.0FO082270.1 Bathycoccus prasinos genomic : Chromosome_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007510890.10.0PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
TrEMBLK8F3080.0K8F308_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007510890.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.27e-12C2H2 family protein