PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy09g04110
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 183aa    MW: 21297.3 Da    PI: 4.6251
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy09g04110genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H225.24.1e-08103125123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F++  nLk+H r H
  Bathy09g04110 103 YECDVCEKCFTTAGNLKKHKRIH 125
                    99*******************99 PP
2zf-C2H2262.3e-08131153123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C+ C k+Fs + +Lk+H+r H
  Bathy09g04110 131 YECEVCEKRFSESGSLKTHMRIH 153
                    99*******************99 PP
3zf-C2H226.91.2e-08159182123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C  C+k F++  +L++H+rt H
  Bathy09g04110 159 YECDVCDKAFRQYGHLQSHMRTqH 182
                    99********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.56E-1485131No hitNo description
Gene3DG3DSA:3.30.160.602.3E-16100124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000965.3E-6103125IPR007087Zinc finger, C2H2
SMARTSM003551.8E-4103125IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.29103130IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
SuperFamilySSF576674.94E-20125177No hitNo description
Gene3DG3DSA:3.30.160.601.9E-18125150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000961.7E-5131153IPR007087Zinc finger, C2H2
SMARTSM003558.8E-5131153IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.124131158IPR007087Zinc finger, C2H2
PROSITE patternPS000280133153IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-15151180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.799159182IPR007087Zinc finger, C2H2
PfamPF000969.2E-7159182IPR007087Zinc finger, C2H2
SMARTSM003554.5E-5159182IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280161182IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MARRKNPHPQ RAVNVKTVVV GDDEEEEPVL CLQIPPDDDD DDVVVVVDDD DDDDDDDDDD  60
DDEMDEQTRK EETTFRKGSK RKRTQHECGV CEKSFSTDNE KPYECDVCEK CFTTAGNLKK  120
HKRIHTNEKP YECEVCEKRF SESGSLKTHM RIHTKERPYE CDVCDKAFRQ YGHLQSHMRT  180
QH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mey_C1e-2386180283CONSENSUS ZINC FINGER
1mey_F1e-2386180283CONSENSUS ZINC FINGER
1mey_G1e-2386180283CONSENSUS ZINC FINGER
2i13_A8e-238618018188Aart
2i13_B8e-238618018188Aart
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822701e-164FO082270.1 Bathycoccus prasinos genomic : Chromosome_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007511163.11e-130PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
SwissprotP081552e-28KRH1_DROME; Krueppel homolog 1
SwissprotQ8TF452e-28ZN418_HUMAN; Zinc finger protein 418
TrEMBLK8F3241e-129K8F324_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007511163.11e-129(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.19e-11C2H2 family protein