PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy09g04220
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 257aa    MW: 30220.4 Da    PI: 5.3007
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy09g04220genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.27.6e-0793115123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C+ C k+F + s L  H+r H
  Bathy09g04220  93 HECGVCEKVFVSASKLAEHMRIH 115
                    78*******************99 PP
2zf-C2H227.86.2e-09121143123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++ nLk+H+r H
  Bathy09g04220 121 YECDVCEKRFTTSGNLKTHMRIH 143
                    99*******************99 PP
3zf-C2H225.33.9e-08149171123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++s+Lk+H r H
  Bathy09g04220 149 YECDVCEKRFRTSSDLKSHKRIH 171
                    99*******************99 PP
4zf-C2H224.47.4e-08177199123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+Fsr ++Lk+H+  H
  Bathy09g04220 177 YECDVCEKRFSRADSLKVHMHIH 199
                    99******************998 PP
5zf-C2H224.47.2e-08205227123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C+  F+++++Lk+H+r H
  Bathy09g04220 205 YECDVCDIAFRHSDTLKNHMRIH 227
                    99*******************99 PP
6zf-C2H222.33.4e-07233256123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C  C k+F+++s Lk+H+ t H
  Bathy09g04220 233 YECDVCEKRFTQSSGLKTHMCTqH 256
                    99*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-1492122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.7E-493115IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.81593120IPR007087Zinc finger, C2H2
PfamPF139120.06493115IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SuperFamilySSF576674.67E-24101158No hitNo description
SMARTSM003552.3E-5121143IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.165121148IPR007087Zinc finger, C2H2
PfamPF000969.7E-7121143IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.6E-18123142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-16143166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.7E-4149171IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.311149176IPR007087Zinc finger, C2H2
PfamPF000961.0E-5149171IPR007087Zinc finger, C2H2
PROSITE patternPS000280151171IPR007087Zinc finger, C2H2
SuperFamilySSF576672.2E-22158214No hitNo description
Gene3DG3DSA:3.30.160.607.1E-19167197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.6E-4177199IPR015880Zinc finger, C2H2-like
PfamPF000961.7E-5177199IPR007087Zinc finger, C2H2
PROSITE profilePS5015715.542177204IPR007087Zinc finger, C2H2
PROSITE patternPS000280179199IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-16198225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.73E-20199251No hitNo description
SMARTSM003552.5E-4205227IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015715.334205232IPR007087Zinc finger, C2H2
PfamPF000961.3E-5205227IPR007087Zinc finger, C2H2
PROSITE patternPS000280207227IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.2E-16226254IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01233256IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.635233256IPR007087Zinc finger, C2H2
PfamPF128740.024233252No hitNo description
PROSITE patternPS000280235256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSRRKNPHPQ RAVNVKTVVV GDDEEEEQEP VLCLQIPPDE DDDVFVVVDD DDDGDDDDDD  60
DEEDDDNDYE KDEQIRKEET AFRKGTKRKR TQHECGVCEK VFVSASKLAE HMRIHTNERP  120
YECDVCEKRF TTSGNLKTHM RIHTKEKPYE CDVCEKRFRT SSDLKSHKRI HTNERPYECD  180
VCEKRFSRAD SLKVHMHIHT NEKPYECDVC DIAFRHSDTL KNHMRIHTNE KPYECDVCEK  240
RFTQSSGLKT HMCTQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A8e-45932524188Aart
2i13_B8e-45932524188Aart
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822700.0FO082270.1 Bathycoccus prasinos genomic : Chromosome_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007510973.10.0PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
SwissprotP100733e-53ZSC22_HUMAN; Zinc finger and SCAN domain-containing protein 22
SwissprotP170361e-53ZNF3_HUMAN; Zinc finger protein 3
SwissprotQ8NB503e-53ZFP62_HUMAN; Zinc finger protein 62 homolog
TrEMBLK8F2J70.0K8F2J7_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007510973.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-13C2H2 family protein