PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bathy10g00480

Organism

Bathycoccus prasinos

Taxonomic ID

41875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus

Family

SBP

Protein Properties

Length: 1607aa MW: 181124 Da PI: 7.0158

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bathy10g00480	genome	ORCAE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	49.4	1.2e-15	202	266	2	68
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLak 68 C+v+gC+++ + y r kvC +h ka +v+ +++ rfCq+C++fh++ +f+e++r+C r L++ Bathy10g00480 202 CKVNGCDEECLS--LYSIRVKVCVFHLKADEVMFNNELCRFCQKCTKFHNVGNFEEGRRACLRSLNR 266 ****998755..69*******************************************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.3E-15	198	260	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	15.939	199	274	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.19E-14	200	267	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.7E-16	202	266	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	4.8E-4	762	892	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.18E-6	762	896	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	0.00105	791	914	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0016021	Cellular Component	integral component of membrane
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1607 aa Download sequence Send to blast
MATTTNTNVE SIFNNDDNTN NTKEEEEEEE EERERILPLN ENEKDAAWAL EEFKWDSDKA 60 IGEKITTLTT LKTGKKRVGG RGGGLKRKQT MGTEDGSNDD DDDEEEEEEE EADVNDLRNS 120 PRFRPMVRTS EEKEGDKNKY LEKRRKEEKN FTTDSADGTA DDGARTSIAA AALATTGFVP 180 VKLRSEAANG TKYRVIKHKV FCKVNGCDEE CLSLYSIRVK VCVFHLKADE VMFNNELCRF 240 CQKCTKFHNV GNFEEGRRAC LRSLNRLAFK RVPASAQESA LNTLALYDRM IMSQAGTGEA 300 APNGGANSDS ATNTDNNKRE VSSVLPSNEL TRQRRIRDAL TLLGASWHQG TRKKERKERM 360 TIKERNEEVQ QQSQGTQIDQ KTLSVSQLRV IRLQCAQMLL DHLPENFDPS TNAEERRRRE 420 IINASYTRSE GYDRLMHLDN EAFITLAAEI KIHNKQPHDL SASIGEGVKN YFAEKSGHPP 480 ARLEFTAEPG CTKLNVDALI PPMTSRHSFL RNRRGTSDKE VAKELASYAI DTDDGGLDDV 540 DIDVIIGAVR TRRRNGEWEL STKIRKKHDC RSAKHVMCTN PDILNSCENE NTLIVTGVPP 600 DVVAVVRING QVERGSVIAR FGGNSPVTEA STRKTTTRLN QSSSESNQQQ ERPDVLQNSQ 660 SNYVYVSVPL DYAEGLMTIN LIWPEGHEFA GSALCDPIII LLTPDVDLAQ ELKEAMDEVH 720 ALSSEFCYTF KRYVGACLVK DGDVRSFTNP NFCLVQKDIT LWALRNGFPK LSKRLLKPQV 780 QMLENARSLA AADGVYKTYV YAATLSDSVE IVREVIALGG EKNLFGTVST VGNKETRDTA 840 LHIAAMNGNT NMVLDFLSIV SSIESWFTSR NSSGFSPRDC AVLAQSSNLS KAIAKVLDDP 900 LLIASNAVCL AVKEFVSKVK SGAYTAPDHA PAIDHVEELE NQSQAIFARA SDLVFESLTE 960 ISTTVSQNEL EEARKVATVR LLEITNMLLQ HKACFLKLFS LAIERDCKLL ESYNGADSMD 1020 KSFDSPIQSG ADSFFVELLS SYDSGQGRGY VPQSIRKIFG KLSNALASLK YKSMLAFEDP 1080 LIEKAYVLEN SFYRKRVDLV AFLLIFSVIC ARRIKFSDGT FSDFVFTFFR MGESSSLCFY 1140 ISRMIGVLTF PGAIFALLVY PKFYTRHRES ITMLVRYMSP LMWSLRSANE TAPVSIARVM 1200 FMRSSACVYG CRFERHAFVT MMNYFFPFAR MLKIFEGQAA DLTFSTVVED LDRNGCNRIL 1260 SMGSIGLNLV VSFLVEARFR RKFAAKYGVN WMKISWMTSP PLPPGEDEKF IKDIREEVGA 1320 FDSDEEDDVS HKSLNRRNRF FKFISEQRKS LHAKAYFAFP NPRDEGACVL ENSNFRRPYD 1380 IAIFGYLYLI WGSELYRKYL KWGHSFDWYA LSMFTKCDVT EDTMRITGYE RRVSALFLLK 1440 VFSSSVLVGT SLIAIFLPRV YCHSRESFIA VLKLSASVAP ALKVAESPEF VVVIMFRLCA 1500 VLLSVRFERE VMIVLTNAFI IPRALEWYVG TEEYGIIDVS GDSSVVTCKG NSGSLNLGIF 1560 SGNWYKWSSF FKFVFVVLMY LQISIVLTLE KQRREAFARK RRIKQH*

Sequence ? help Back to Top

Protein Sequence Length: 1607 aa Download sequence Send to blast

MATTTNTNVE SIFNNDDNTN NTKEEEEEEE EERERILPLN ENEKDAAWAL EEFKWDSDKA  60
IGEKITTLTT LKTGKKRVGG RGGGLKRKQT MGTEDGSNDD DDDEEEEEEE EADVNDLRNS  120
PRFRPMVRTS EEKEGDKNKY LEKRRKEEKN FTTDSADGTA DDGARTSIAA AALATTGFVP  180
VKLRSEAANG TKYRVIKHKV FCKVNGCDEE CLSLYSIRVK VCVFHLKADE VMFNNELCRF  240
CQKCTKFHNV GNFEEGRRAC LRSLNRLAFK RVPASAQESA LNTLALYDRM IMSQAGTGEA  300
APNGGANSDS ATNTDNNKRE VSSVLPSNEL TRQRRIRDAL TLLGASWHQG TRKKERKERM  360
TIKERNEEVQ QQSQGTQIDQ KTLSVSQLRV IRLQCAQMLL DHLPENFDPS TNAEERRRRE  420
IINASYTRSE GYDRLMHLDN EAFITLAAEI KIHNKQPHDL SASIGEGVKN YFAEKSGHPP  480
ARLEFTAEPG CTKLNVDALI PPMTSRHSFL RNRRGTSDKE VAKELASYAI DTDDGGLDDV  540
DIDVIIGAVR TRRRNGEWEL STKIRKKHDC RSAKHVMCTN PDILNSCENE NTLIVTGVPP  600
DVVAVVRING QVERGSVIAR FGGNSPVTEA STRKTTTRLN QSSSESNQQQ ERPDVLQNSQ  660
SNYVYVSVPL DYAEGLMTIN LIWPEGHEFA GSALCDPIII LLTPDVDLAQ ELKEAMDEVH  720
ALSSEFCYTF KRYVGACLVK DGDVRSFTNP NFCLVQKDIT LWALRNGFPK LSKRLLKPQV  780
QMLENARSLA AADGVYKTYV YAATLSDSVE IVREVIALGG EKNLFGTVST VGNKETRDTA  840
LHIAAMNGNT NMVLDFLSIV SSIESWFTSR NSSGFSPRDC AVLAQSSNLS KAIAKVLDDP  900
LLIASNAVCL AVKEFVSKVK SGAYTAPDHA PAIDHVEELE NQSQAIFARA SDLVFESLTE  960
ISTTVSQNEL EEARKVATVR LLEITNMLLQ HKACFLKLFS LAIERDCKLL ESYNGADSMD  1020
KSFDSPIQSG ADSFFVELLS SYDSGQGRGY VPQSIRKIFG KLSNALASLK YKSMLAFEDP  1080
LIEKAYVLEN SFYRKRVDLV AFLLIFSVIC ARRIKFSDGT FSDFVFTFFR MGESSSLCFY  1140
ISRMIGVLTF PGAIFALLVY PKFYTRHRES ITMLVRYMSP LMWSLRSANE TAPVSIARVM  1200
FMRSSACVYG CRFERHAFVT MMNYFFPFAR MLKIFEGQAA DLTFSTVVED LDRNGCNRIL  1260
SMGSIGLNLV VSFLVEARFR RKFAAKYGVN WMKISWMTSP PLPPGEDEKF IKDIREEVGA  1320
FDSDEEDDVS HKSLNRRNRF FKFISEQRKS LHAKAYFAFP NPRDEGACVL ENSNFRRPYD  1380
IAIFGYLYLI WGSELYRKYL KWGHSFDWYA LSMFTKCDVT EDTMRITGYE RRVSALFLLK  1440
VFSSSVLVGT SLIAIFLPRV YCHSRESFIA VLKLSASVAP ALKVAESPEF VVVIMFRLCA  1500
VLLSVRFERE VMIVLTNAFI IPRALEWYVG TEEYGIIDVS GDSSVVTCKG NSGSLNLGIF  1560
SGNWYKWSSF FKFVFVVLMY LQISIVLTLE KQRREAFARK RRIKQH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	414	419	ERRRRE

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO082269	0.0	FO082269.1 Bathycoccus prasinos genomic : Chromosome_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007510593.1	0.0	predicted protein
TrEMBL	K8EJB8	0.0	K8EJB8_9CHLO; Uncharacterized protein
STRING	XP_007510593.1	0.0	(Bathycoccus prasinos)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76580.1	2e-11	SBP family protein

Link Out ? help Back to Top
Entrez Gene	19013125