PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy10g00740
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family HB-other
Protein Properties Length: 237aa    MW: 27826.4 Da    PI: 9.8088
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy10g00740genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.61.4e-051852152252
                    SSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
       Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrR 52 
                    ++yps++e+  L++ +g++  q+++W  N R
  Bathy10g00740 185 HPYPSRKEKMVLSQATGMSPGQISNWCINFR 215
                    89************************77766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.021158221IPR001356Homeobox domain
SuperFamilySSF466892.99E-11168225IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-15169224IPR009057Homeodomain-like
PfamPF059201.1E-13178217IPR008422Homeobox KN domain
CDDcd000865.97E-4184220No hitNo description
PROSITE patternPS000270196219IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MNAEEEEEET QRKRRALING FSSSFEGRRD DIAKRVELFR RDTEEEEEEE EEHHHNNREF  60
TNALREALRD VSSTMNKREE DKKEENCLTS LSSKKSIATQ TERNVKRIMN KRLERVKKMT  120
DYVAVASWGG GGKSFSVEDD DTRRLCHDAR MMMEEKKKRL KPGSAASTRR ITKPLKDWMY  180
ENVHHPYPSR KEKMVLSQAT GMSPGQISNW CINFRGRKMR PLVREFVEEA RKVVQK*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822690.0FO082269.1 Bathycoccus prasinos genomic : Chromosome_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007510546.11e-174predicted protein
TrEMBLK8EJA31e-173K8EJA3_9CHLO; Uncharacterized protein
STRINGXP_007510546.11e-174(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP321077
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-12BEL1-like homeodomain 7