PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy10g01100
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 127aa    MW: 15039.1 Da    PI: 8.5108
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy10g01100genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.41.5e-077597123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C  C k+F + s LkrH r H
  Bathy10g01100 75 HECDVCEKRFATASGLKRHVRIH 97
                   78*******************99 PP
2zf-C2H225.14.3e-08103126123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C  C + F+++ +Lk+H+r+ H
  Bathy10g01100 103 YECDVCEMKFRQSGDLKVHMRRwH 126
                    99********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-1574103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.64E-1875123No hitNo description
SMARTSM003552.6E-47597IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015715.35575102IPR007087Zinc finger, C2H2
PfamPF000962.6E-57597IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM003550.045103126IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.261103126IPR007087Zinc finger, C2H2
PfamPF000962.3E-6103126IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-10104123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280105126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MGRRKNPHPK RAVNARTVLK VARDKEEEVE EEEEPLVLCL RIPEEEDDLE ANHHQIQKEE  60
TTFNKKGTKR KRAQHECDVC EKRFATASGL KRHVRIHTNE KPYECDVCEM KFRQSGDLKV  120
HMRRWH*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822690.0FO082269.1 Bathycoccus prasinos genomic : Chromosome_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007510532.12e-88PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
TrEMBLK8EZW64e-87K8EZW6_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007510532.16e-88(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653