PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy10g02910
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 215aa    MW: 25968.2 Da    PI: 8.0788
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy10g02910genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H225.14.5e-082345123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C  C k+F+ +s L++H+rtH
  Bathy10g02910 23 HECDVCEKVFRYPSKLVSHMRTH 45
                   78********************9 PP
2zf-C2H2292.5e-095173123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C  C k+F+++ nL++H+rtH
  Bathy10g02910 51 YECDVCEKRFTTSGNLTNHMRTH 73
                   99********************9 PP
3zf-C2H2271.1e-0879101123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++ nL++H+r H
  Bathy10g02910  79 YECDVCEKRFTTSGNLTNHMRFH 101
                    99*******************99 PP
4zf-C2H224.85.4e-08107129123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  C++ F++  +L++H+r H
  Bathy10g02910 107 FECDVCDEAFRQLGHLQSHMRIH 129
                    89*******************99 PP
5zf-C2H220.21.6e-06135157123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C ++Fs+  +L++H r H
  Bathy10g02910 135 YECDFCERHFSQLGTLQNHVRIH 157
                    99*******************99 PP
6zf-C2H225.33.9e-08163185123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C+ C ++F+ +s+Lk+H+r H
  Bathy10g02910 163 YECEVCERCFRESSTLKVHMRIH 185
                    99*******************99 PP
7zf-C2H223.21.7e-07191214123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C+ C + F+++sn++rH+rt H
  Bathy10g02910 191 YECEACEMKFRQSSNFRRHMRTqH 214
                    99********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.3E-142252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.962350IPR007087Zinc finger, C2H2
SMARTSM003557.7E-42345IPR015880Zinc finger, C2H2-like
PfamPF000963.6E-62345IPR007087Zinc finger, C2H2
SuperFamilySSF576675.72E-192373No hitNo description
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
PROSITE profilePS5015716.2495178IPR007087Zinc finger, C2H2
SMARTSM003552.8E-55173IPR015880Zinc finger, C2H2-like
PfamPF000963.2E-75173IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-175380IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
SuperFamilySSF576673.35E-2360116No hitNo description
SMARTSM003551.7E-479101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.0279106IPR007087Zinc finger, C2H2
PfamPF000963.2E-679101IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.8E-1781108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM003551.3E-4107129IPR015880Zinc finger, C2H2-like
PfamPF000964.7E-6107129IPR007087Zinc finger, C2H2
PROSITE profilePS5015715.625107134IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-16109128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.64E-21115172No hitNo description
Gene3DG3DSA:3.30.160.602.3E-16129154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0011135157IPR015880Zinc finger, C2H2-like
PfamPF138940.0011135157No hitNo description
PROSITE profilePS5015715.189135162IPR007087Zinc finger, C2H2
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-16155182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.39E-19157209No hitNo description
PROSITE profilePS5015716.165163190IPR007087Zinc finger, C2H2
SMARTSM003550.0019163185IPR015880Zinc finger, C2H2-like
PfamPF000961.4E-5163185IPR007087Zinc finger, C2H2
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-15183212IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0011191214IPR015880Zinc finger, C2H2-like
PfamPF000961.4E-5191214IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.03191214IPR007087Zinc finger, C2H2
PROSITE patternPS000280193214IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDEQIRKEEP TFRKGSKRKR TQHECDVCEK VFRYPSKLVS HMRTHTNERP YECDVCEKRF  60
TTSGNLTNHM RTHTNERPYE CDVCEKRFTT SGNLTNHMRF HTNEKPFECD VCDEAFRQLG  120
HLQSHMRIHT NEKPYECDFC ERHFSQLGTL QNHVRIHTNE KPYECEVCER CFRESSTLKV  180
HMRIHTNEKP YECEACEMKF RQSSNFRRHM RTQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A3e-50232127188Aart
2i13_B3e-50232127188Aart
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822690.0FO082269.1 Bathycoccus prasinos genomic : Chromosome_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007510648.11e-156PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
TrEMBLK8EJH41e-155K8EJH4_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007510648.11e-156(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.22e-10C2H2 family protein