PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy11g01580
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 246aa    MW: 29369.8 Da    PI: 7.388
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy11g01580genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H226.31.8e-0882104123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  C k+F+ +s+L rH+rtH
  Bathy11g01580  82 HECDVCEKVFRYPSYLARHMRTH 104
                    78********************9 PP
2zf-C2H223.51.4e-07110132123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+Fs++ +L+ H r H
  Bathy11g01580 110 YECDVCEKRFSQSGHLQDHVRIH 132
                    99*******************99 PP
3zf-C2H222.72.5e-07138160123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C+k F+++  L++H r H
  Bathy11g01580 138 YECDVCDKAFRTSGGLTQHKRIH 160
                    99*******************99 PP
4zf-C2H220.21.6e-06166188123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C ++F+++ nL++H+r H
  Bathy11g01580 166 YECDVCEMRFRHSCNLQTHMRIH 188
                    99*******************99 PP
5zf-C2H224.66.5e-08194216123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  C k+F+++ +L++H+r H
  Bathy11g01580 194 FECDVCEKRFRQSGSLTQHMRIH 216
                    89*******************99 PP
6zf-C2H220.81e-06222245123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    ++C  C k++++ s Lk H+rt H
  Bathy11g01580 222 FECDVCEKRYRQLSGLKYHMRTqH 245
                    89********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000962.3E-682104IPR007087Zinc finger, C2H2
SMARTSM003554.6E-482104IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-1482111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.64882109IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SuperFamilySSF576675.51E-2490147No hitNo description
SMARTSM003552.0E-4110132IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.186110137IPR007087Zinc finger, C2H2
PfamPF138943.4E-4110132No hitNo description
Gene3DG3DSA:3.30.160.609.9E-18112139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
SuperFamilySSF576672.02E-11137169No hitNo description
SMARTSM003553.1E-4138160IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.02138165IPR007087Zinc finger, C2H2
PfamPF139121.9E-4138161IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-17140167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
SMARTSM003550.0023166188IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015715.147166193IPR007087Zinc finger, C2H2
PfamPF128740.012166188No hitNo description
PROSITE patternPS000280168188IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-15168187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.77E-23175231No hitNo description
Gene3DG3DSA:3.30.160.603.9E-18188213IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000968.5E-6194216IPR007087Zinc finger, C2H2
SMARTSM003558.9E-5194216IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.29194221IPR007087Zinc finger, C2H2
PROSITE patternPS000280196216IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.9E-15214243IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0023222245IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.177222245IPR007087Zinc finger, C2H2
PfamPF138947.0E-4222245No hitNo description
PROSITE patternPS000280224245IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSSRRRKNPH PKRAVNARTV LKGEKEEPNL VLCSRIPDED DDFNEANHHQ IQKEEEEGEE  60
DEDEEDEEEI TVRKGTKRKR GHECDVCEKV FRYPSYLARH MRTHTKDKPY ECDVCEKRFS  120
QSGHLQDHVR IHTNEKPYEC DVCDKAFRTS GGLTQHKRIH TKEKPYECDV CEMRFRHSCN  180
LQTHMRIHTN EKPFECDVCE KRFRQSGSLT QHMRIHTNEK PFECDVCEKR YRQLSGLKYH  240
MRTQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A1e-408224313188Aart
2i13_B1e-408224313188Aart
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822680.0FO082268.1 Bathycoccus prasinos genomic : Chromosome_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007510241.10.0PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
SwissprotP100737e-54ZSC22_HUMAN; Zinc finger and SCAN domain-containing protein 22
TrEMBLK8EKM11e-180K8EKM1_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007510241.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-10C2H2 family protein