PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy11g01860
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 189aa    MW: 22638.7 Da    PI: 7.8175
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy11g01860genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.7e-065375123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C  C ++++++++Lk+H+r H
  Bathy11g01860 53 HECDVCEMTCRDSYDLKVHMRIH 75
                   78*******************99 PP
2zf-C2H226.71.4e-0881103123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+Fsr+ nLk+H r H
  Bathy11g01860  81 YECDVCEKRFSRSGNLKSHKRIH 103
                    99*******************99 PP
3zf-C2H223.21.8e-07109131123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C+k F+++  L++H r H
  Bathy11g01860 109 YECDVCDKAFRTSGGLTQHKRIH 131
                    99*******************99 PP
4zf-C2H2193.7e-06137159123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C ++F+++ +L++H+r H
  Bathy11g01860 137 YECDVCEMRFRHSCSLQTHMRIH 159
                    99*******************99 PP
5zf-C2H221.56.2e-07165188123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    ++C+ C k++++ s Lk H+rt H
  Bathy11g01860 165 FECHVCEKRYRQLSGLKYHMRTqH 188
                    89********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.4E-135282IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00395375IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.46E-1753103No hitNo description
PROSITE profilePS5015712.1335380IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
SMARTSM003553.6E-481103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.5681108IPR007087Zinc finger, C2H2
PfamPF000965.3E-681103IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-1883108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.01E-2290146No hitNo description
Gene3DG3DSA:3.30.160.602.0E-17109137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.1E-4109131IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.02109136IPR007087Zinc finger, C2H2
PfamPF000962.1E-5109131IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.78E-17131183No hitNo description
PROSITE profilePS5015715.043137164IPR007087Zinc finger, C2H2
SMARTSM003550.0023137159IPR015880Zinc finger, C2H2-like
PfamPF128740.0072137159No hitNo description
Gene3DG3DSA:3.30.160.601.7E-13138156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-13157186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0077165188IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.99165188IPR007087Zinc finger, C2H2
PfamPF139120.062165188IPR007087Zinc finger, C2H2
PROSITE patternPS000280167188IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDARDKEEEE KEEEPVLCLR IPDEDDDLEA SQQMRKEETT CIKKGTKRKR TQHECDVCEM  60
TCRDSYDLKV HMRIHTKEKP YECDVCEKRF SRSGNLKSHK RIHTNEKPYE CDVCDKAFRT  120
SGGLTQHKRI HTKEKPYECD VCEMRFRHSC SLQTHMRIHT NEKPFECHVC EKRYRQLSGL  180
KYHMRTQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A1e-335318615188Aart
2i13_B1e-335318615188Aart
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822680.0FO082268.1 Bathycoccus prasinos genomic : Chromosome_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007510384.11e-135PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
SwissprotQ8NB503e-40ZFP62_HUMAN; Zinc finger protein 62 homolog
TrEMBLK8EL711e-134K8EL71_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007510384.11e-135(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.12e-10C2H2 family protein