PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy11g02260
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 222aa    MW: 26180.1 Da    PI: 5.0039
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy11g02260genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.51.4e-07114136123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  C k+F+ +s L  H+rtH
  Bathy11g02260 114 HECDVCEKVFRYPSGLAIHMRTH 136
                    78********************9 PP
2zf-C2H227.38.6e-09142164123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++ nLk+H+r H
  Bathy11g02260 142 YECDVCEKRFTQSGNLKTHMRIH 164
                    99*******************99 PP
3zf-C2H227.67e-09170192123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C+ C+k F+++s+Lk+H+  H
  Bathy11g02260 170 YECEVCDKAFRDSSTLKSHMLIH 192
                    99******************998 PP
4zf-C2H222.72.5e-07198221123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C+ C ks+++  +L+ H+rt H
  Bathy11g02260 198 YECHECEKSYRQLGSLQYHMRTqH 221
                    99********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003559.1E-4114136IPR015880Zinc finger, C2H2-like
PfamPF000967.7E-6114136IPR007087Zinc finger, C2H2
PROSITE profilePS5015714.482114141IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.0E-15114143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SuperFamilySSF576671.97E-24122179No hitNo description
SMARTSM003554.5E-5142164IPR015880Zinc finger, C2H2-like
PfamPF000961.2E-6142164IPR007087Zinc finger, C2H2
PROSITE profilePS5015716.498142169IPR007087Zinc finger, C2H2
PROSITE patternPS000280144164IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-18144164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.06E-19164216No hitNo description
Gene3DG3DSA:3.30.160.601.1E-17165189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015715.833170197IPR007087Zinc finger, C2H2
SMARTSM003551.6E-4170192IPR015880Zinc finger, C2H2-like
PfamPF000961.6E-6170192IPR007087Zinc finger, C2H2
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.6E-14190219IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001198221IPR015880Zinc finger, C2H2-like
PfamPF000962.0E-5198221IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.822198221IPR007087Zinc finger, C2H2
PROSITE patternPS000280200221IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MSSRRRKNPH PKRAVNARTV LKVAREEEEV EEEPKVLCLR IPDEDDDLEA NQIQKEEEEG  60
EDEEDEEDDE GDDDDVERLR RILCVPCDDL VEQNQMREEE TAFIAKGVKR KRGHECDVCE  120
KVFRYPSGLA IHMRTHTKEK PYECDVCEKR FTQSGNLKTH MRIHTSERPY ECEVCDKAFR  180
DSSTLKSHML IHTNEKPYEC HECEKSYRQL GSLQYHMRTQ H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ml2_A1e-271152185146Zinc finger and BTB domain-containing protein 24
6ml3_A1e-271152185146Zinc finger and BTB domain-containing protein 24
6ml4_A1e-271152185146Zinc finger and BTB domain-containing protein 24
6ml5_A1e-271152185146Zinc finger and BTB domain-containing protein 24
6ml6_A1e-271152185146Zinc finger and BTB domain-containing protein 24
6ml7_A1e-271152185146Zinc finger and BTB domain-containing protein 24
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822680.0FO082268.1 Bathycoccus prasinos genomic : Chromosome_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007510057.11e-161PREDICTED: zinc finger protein 347-like
TrEMBLK8EJP71e-160K8EJP7_9CHLO; PREDICTED: zinc finger protein 347-like
STRINGXP_007510057.11e-161(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.23e-11C2H2 family protein