PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bathy11g03440

Organism

Bathycoccus prasinos

Taxonomic ID

41875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus

Family

C2H2

Protein Properties

Length: 246aa MW: 29436.9 Da PI: 7.2424

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bathy11g03440	genome	ORCAE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	24.1	9.1e-08	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k+F+ +s+ +rH+rtH Bathy11g03440 82 HECDVCEKVFRYPSDVTRHMRTH 104 78********************9 PP
2	zf-C2H2	28.3	4.1e-09	110	132	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+Fs++ nL++H+r H Bathy11g03440 110 YECDVCEKRFSDSGNLTKHMRIH 132 99*******************99 PP
3	zf-C2H2	26.5	1.6e-08	138	160	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+Fs++ +L++H+r H Bathy11g03440 138 YECAVCEKRFSHSGSLQKHMRIH 160 99*******************99 PP
4	zf-C2H2	25.5	3.3e-08	166	188	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+Fs++ +L++H+r H Bathy11g03440 166 YECDVCEKCFSQSGHLQTHMRIH 188 99*******************99 PP
5	zf-C2H2	22.2	3.7e-07	194	216	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+ ++ L+rH+r H Bathy11g03440 194 YECDVCEKRFRYSHVLQRHMRIH 216 99*******************99 PP
6	zf-C2H2	24.2	8.6e-08	222	245	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C C k+F+r+++LkrH rt H Bathy11g03440 222 YECDMCEKRFRRSDTLKRHKRTqH 245 99********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.2E-15	82	111	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF00096	8.1E-6	82	104	IPR007087	Zinc finger, C2H2
SMART	SM00355	8.6E-4	82	104	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	14.898	82	109	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	84	104	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.52E-23	90	147	No hit	No description
PROSITE profile	PS50157	16.061	110	137	IPR007087	Zinc finger, C2H2
Pfam	PF00096	6.3E-7	110	132	IPR007087	Zinc finger, C2H2
SMART	SM00355	2.7E-5	110	132	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	112	132	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.6E-17	112	139	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF00096	8.8E-6	138	160	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.1E-4	138	160	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	16.415	138	165	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	9.3E-18	140	167	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	140	160	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.45E-24	147	203	No hit	No description
Pfam	PF00096	5.3E-6	166	188	IPR007087	Zinc finger, C2H2
SMART	SM00355	3.1E-4	166	188	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	16.498	166	193	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	168	188	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.9E-18	168	195	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.66E-20	188	240	No hit	No description
Pfam	PF13894	0.0011	194	216	No hit	No description
SMART	SM00355	7.0E-4	194	216	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	15.895	194	221	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.4E-16	196	215	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	196	216	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	6.1E-15	216	243	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.902	222	245	IPR007087	Zinc finger, C2H2
Pfam	PF13894	3.3E-4	222	245	No hit	No description
SMART	SM00355	9.5E-4	222	245	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	224	245	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MRRKNPHPQR AVNAGTVLRV VKGRREEEGE EEGEEPVLCL RIPDEDDFEA NHQIQKEDEE 60 EGEEEEEEEI TVRKGTKRKR GHECDVCEKV FRYPSDVTRH MRTHTNEKPY ECDVCEKRFS 120 DSGNLTKHMR IHANEKPYEC AVCEKRFSHS GSLQKHMRIH TNEKPYECDV CEKCFSQSGH 180 LQTHMRIHTN EKPYECDVCE KRFRYSHVLQ RHMRIHTNEK PYECDMCEKR FRRSDTLKRH 240 KRTQH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2i13_A	3e-49	82	243	4	188	Aart
2i13_B	3e-49	82	243	4	188	Aart
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO082268	0.0	FO082268.1 Bathycoccus prasinos genomic : Chromosome_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007510142.1	1e-180	PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
TrEMBL	K8EJW3	1e-178	K8EJW3_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRING	XP_007510142.1	1e-179	(Bathycoccus prasinos)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP70	6	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	3e-10	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	19013023