PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy12g01120
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family bHLH
Protein Properties Length: 260aa    MW: 27808.6 Da    PI: 4.9374
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy12g01120genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86e-11106158154
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                    ++++++ rE+ RRd +N++fe L + l + a   +  K +K++i++ A e+I  L
  Bathy12g01120 106 KKVKKSVREKARRDALNDRFEDLSRSLLEsA--DDELKTDKSSIVTAARECILGL 158
                    678999*****************99999955..89999**************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-1198169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-10103179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.023105158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-8106158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.66E-10106162No hitNo description
SMARTSM003531.0E-7111164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSKLPLIERL PSDVVESDDW LSNAFPIVEE DNGALSPFDL ADIFPQPVET IPNTNSNNLI  60
ALASPQTTTK TSLGKHALAS AEVAAVTTIA ETTATATKKT TTRPVKKVKK SVREKARRDA  120
LNDRFEDLSR SLLESADDEL KTDKSSIVTA ARECILGLRE QLGKLNACLA AERSEWAKTK  180
QELIAEKILV EQKLQNFMAK MPFASAIPST GGSKHAAANV GITGTVVTED TDGDAPLAPI  240
LVVSTTTAEE DAKWRAPLA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822670.0FO082267.1 Bathycoccus prasinos genomic : Chromosome_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007509951.10.0unknown protein
TrEMBLK8ELY30.0K8ELY3_9CHLO; Uncharacterized protein
STRINGXP_007509951.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP546069