PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy13g01410
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 252aa    MW: 30148 Da    PI: 4.7569
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy13g01410genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H226.81.2e-08115137123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  Cgk+F  +s+L +H+r H
  Bathy13g01410 115 HECDVCGKMFAKPSHLATHMRIH 137
                    78*******************99 PP
2zf-C2H225.53.4e-08143165123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC  C k+F+++ +Lk H+r H
  Bathy13g01410 143 YKCDVCEKRFTQSGSLKIHMRIH 165
                    9********************99 PP
3zf-C2H228.53.6e-09171193123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C+k F+++ +L++H+r H
  Bathy13g01410 171 YECDVCDKAFRQPGHLETHMRIH 193
                    99*******************99 PP
4zf-C2H225.72.8e-08199221123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++ nLk+H r H
  Bathy13g01410 199 YECDVCEKRFTQPGNLKKHKRIH 221
                    99*******************99 PP
5zf-C2H2241e-07227249123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C+k F+r++ Lk+H rtH
  Bathy13g01410 227 YECDVCDKAFRRSDVLKTHKRTH 249
                    99********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.11E-20114165No hitNo description
PfamPF000962.7E-6115137IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-16115144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.0E-4115137IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.332115142IPR007087Zinc finger, C2H2
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
PfamPF000963.1E-6143165IPR007087Zinc finger, C2H2
SMARTSM003553.0E-5143165IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.311143170IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-19145172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
SuperFamilySSF576671.53E-24152208No hitNo description
PfamPF000963.4E-7171193IPR007087Zinc finger, C2H2
SMARTSM003552.6E-5171193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.477171198IPR007087Zinc finger, C2H2
PROSITE patternPS000280173193IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.9E-19173200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.39E-20197249No hitNo description
PfamPF000964.7E-6199221IPR007087Zinc finger, C2H2
PROSITE profilePS5015716.394199226IPR007087Zinc finger, C2H2
SMARTSM003551.2E-4199221IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280201221IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-17201220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.603.0E-15221250IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.695227251IPR007087Zinc finger, C2H2
PfamPF139122.9E-7227250IPR007087Zinc finger, C2H2
SMARTSM003558.8E-4227249IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280229251IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MRRRKNPHPK RAVNARTVLK GEKEEKEEPL VLCSRIPDEE DDLEVNHHQI RKEEEEEGEE  60
EEEGEEEEEE EEEEEEGEEE EEEEEEEEEE EEEEEEEEEE EEVTVRKGAK RKRGHECDVC  120
GKMFAKPSHL ATHMRIHTNE KPYKCDVCEK RFTQSGSLKI HMRIHTNEKP YECDVCDKAF  180
RQPGHLETHM RIHTNEKPYE CDVCEKRFTQ PGNLKKHKRI HTNERPYECD VCDKAFRRSD  240
VLKTHKRTHH H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A1e-421152494188Aart
2i13_B1e-421152494188Aart
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822660.0FO082266.1 Bathycoccus prasinos genomic : Chromosome_13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007509393.11e-174PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
SwissprotP100731e-47ZSC22_HUMAN; Zinc finger and SCAN domain-containing protein 22
TrEMBLK8EMB31e-173K8EMB3_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007509393.11e-174(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.23e-12C2H2 family protein