PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy14g01030
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C3H
Protein Properties Length: 75aa    MW: 7815.65 Da    PI: 8.9524
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy14g01030genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH421.6e-132247126
                   --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                   ykt+lC+ f++ GtC++G+ C FaH+
  Bathy14g01030 22 YKTRLCNSFRQEGTCRFGSACLFAHS 47
                   9************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.3E-161952IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-111953IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.7322149IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-72148IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-102247IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MAALEQGGVH AKTINARDRP RYKTRLCNSF RQEGTCRFGS ACLFAHSSEE LRRTLTDGGA  60
DGSRDVSGLG GGGG*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822651e-122FO082265.1 Bathycoccus prasinos genomic : Chromosome_14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007509102.12e-47unknown protein
TrEMBLK8ENM26e-46K8ENM2_9CHLO; Uncharacterized protein
STRINGXP_007509102.19e-47(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP36231314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35430.14e-08C3H family protein