PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy14g02250
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family E2F/DP
Protein Properties Length: 286aa    MW: 32305.1 Da    PI: 8.5783
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy14g02250genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP63.14e-202988369
        E2F_TDP  3 eksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirw 69
                   ++sL+llt+kf++ll    +++++lne+a  L   dv  ++RRiYDi+NVLe+l++++kk+kn++ +
  Bathy14g02250 29 SSSLGLLTKKFVELLMG--SNVLDLNEAAVFL---DV--QKRRIYDITNVLEGLGIVTKKSKNYVVC 88
                   58************875..689**********...**..************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013722.3E-232790IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023197.8E-192986IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.2E-192985IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.54E-123085IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd146604.06E-26100209No hitNo description
PfamPF164213.1E-15113206IPR032198E2F transcription factor, CC-MB domain
SuperFamilySSF1440743.14E-15114208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MQFHDSNPSC RFDRFVCSLS KFFIQSIFSS SLGLLTKKFV ELLMGSNVLD LNEAAVFLDV  60
QKRRIYDITN VLEGLGIVTK KSKNYVVCKR ENVGGLRYPA QRSVTKLCPR EQSEFEKILD  120
NQVERMREML ESVFLSPVLQ RSLFIAEKDV NFIPDFSEKI LIAIRAPHGA TLVVPDPSGS  180
VSSKSVKRQY EIFLKSNTGS VEVFLLSSHK SQYEGALHRS EINIAEGELL QNEQCSSSVA  240
LGLNWKFNCA GSLRGLPIPK SSIPQQDWFA HERDIRINLS EMYTR*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822650.0FO082265.1 Bathycoccus prasinos genomic : Chromosome_14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007509277.10.0predicted protein
TrEMBLK8EP540.0K8EP54_9CHLO; Uncharacterized protein
STRINGXP_007509277.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP32581314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.32e-34E2F transcription factor 3