PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy14g03300
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family AP2
Protein Properties Length: 198aa    MW: 22706.4 Da    PI: 8.638
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy14g03300genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.83.4e-1086130150
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaar 50 
                    s+y+GV++   ++rW+A+ r       + k  slg f+ + eAa+a+++++
  Bathy14g03300  86 SKYRGVHQTFPTQRWEAQFRR------QgKPTSLGCFDEEGEAARAYDRMM 130
                    89****************666......34**********66*******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-686130IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-986131IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-787131IPR001471AP2/ERF domain
PROSITE profilePS5103210.04687127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MSPEAFTNLP SIISKKKSID SHSDWKILYG YYGSNMIISW PSDPMIDESS DLHQLKVENR  60
GAGANSQVPC KVSKQRGASK GRTYTSKYRG VHQTFPTQRW EAQFRRQGKP TSLGCFDEEG  120
EAARAYDRMM IWSELHPFQS STEVKDAITR LSSISLNFHY LEYEEDIDAL RQISQEKLIQ  180
ELRKQGRLQQ NSKHDLQ*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822651e-148FO082265.1 Bathycoccus prasinos genomic : Chromosome_14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007509360.11e-147predicted protein
TrEMBLK8ENL81e-146K8ENL8_9CHLO; Uncharacterized protein
STRINGXP_007509360.11e-147(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP27461414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.11e-09AP2 family protein