PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy15g01610
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 178aa    MW: 20960.7 Da    PI: 8.1785
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy15g01610genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H227.66.9e-0998120123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C+ C ksFs+  nLk H+r H
  Bathy15g01610  98 HECEVCEKSFSTAGNLKIHMRIH 120
                    78*******************99 PP
2zf-C2H230.96.1e-10126148123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C+k F+++snLk+H+r H
  Bathy15g01610 126 YECDVCDKAFRHSSNLKVHMRIH 148
                    99*******************99 PP
3zf-C2H228.73.2e-09154177123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C+ C+k F++  +L++H+rt H
  Bathy15g01610 154 YECHVCDKAFRQLGTLQKHMRTqH 177
                    99********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.11E-1295129No hitNo description
Gene3DG3DSA:3.30.160.605.0E-1596119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000961.2E-698120IPR007087Zinc finger, C2H2
SMARTSM003554.4E-598120IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015715.60498125IPR007087Zinc finger, C2H2
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-20120145IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.52E-21120172No hitNo description
PfamPF000968.1E-8126148IPR007087Zinc finger, C2H2
SMARTSM003555.5E-5126148IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015717.018126153IPR007087Zinc finger, C2H2
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-16146175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000964.5E-7154177IPR007087Zinc finger, C2H2
SMARTSM003556.6E-5154177IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.487154177IPR007087Zinc finger, C2H2
PROSITE patternPS000280156177IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MRRRPRKNPH PRRAVNARTA LKGRGKEEPL VFVCSRIPDE DDDLEANHHQ IQKEEEEEEG  60
EDEDVKQLWR IMCVPCDDVV EQKQTRKDDK GVKRKRGHEC EVCEKSFSTA GNLKIHMRIH  120
TNEKPYECDV CDKAFRHSSN LKVHMRIHTN EKPYECHVCD KAFRQLGTLQ KHMRTQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mey_C6e-2198175582CONSENSUS ZINC FINGER
1mey_F6e-2198175582CONSENSUS ZINC FINGER
1mey_G6e-2198175582CONSENSUS ZINC FINGER
2i13_A3e-207717522183Aart
2i13_B3e-207717522183Aart
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
116RRRPRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822640.0FO082264.1 Bathycoccus prasinos genomic : Chromosome_15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007508846.11e-129PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
TrEMBLK8EP051e-128K8EP05_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007508846.11e-129(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.15e-10C2H2 family protein