PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy15g02320
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 244aa    MW: 28984.7 Da    PI: 8.1057
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy15g02320genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H224.85.6e-0880102123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  C k+F r+s+L  H+r H
  Bathy15g02320  80 HECDVCEKVFDRPSSLAIHMRIH 102
                    78*******************99 PP
2zf-C2H221.46.7e-07108130123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C ++F+++s+L++H r H
  Bathy15g02320 108 YECDVCEMRFRHSSTLRVHERIH 130
                    99*******************99 PP
3zf-C2H224.28.2e-08136158123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C +C+k F+ +  Lk H+r H
  Bathy15g02320 136 YECDICDKAFRESGKLKEHMRIH 158
                    99*******************99 PP
4zf-C2H227.95.6e-09164186123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+Fsr+ +L++H+r H
  Bathy15g02320 164 YECDVCEKRFSRSGTLQSHMRIH 186
                    99*******************99 PP
5zf-C2H225.63.1e-08192214123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++s+Lk+H r H
  Bathy15g02320 192 YECDVCEKRFRTSSQLKVHVRIH 214
                    99*******************99 PP
6zf-C2H223.81.1e-07220242123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++ nLk+H+rtH
  Bathy15g02320 220 YECDVCEKRFTQSCNLKTHMRTH 242
                    99********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.6E-1679109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015715.14780107IPR007087Zinc finger, C2H2
SMARTSM003553.8E-480102IPR015880Zinc finger, C2H2-like
PfamPF000966.1E-680102IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SuperFamilySSF576672.8E-2488145No hitNo description
PROSITE profilePS5015715.417108135IPR007087Zinc finger, C2H2
PfamPF128740.013108130No hitNo description
SMARTSM003550.0053108130IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-16110136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.3E-5136158IPR015880Zinc finger, C2H2-like
PfamPF000961.7E-5136158IPR007087Zinc finger, C2H2
PROSITE profilePS5015716.456136163IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-15137155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
SuperFamilySSF576671.29E-23144201No hitNo description
Gene3DG3DSA:3.30.160.603.5E-20156183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015716.415164191IPR007087Zinc finger, C2H2
SMARTSM003555.1E-5164186IPR015880Zinc finger, C2H2-like
PfamPF000962.3E-6164186IPR007087Zinc finger, C2H2
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-18184210IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.02E-19186238No hitNo description
PROSITE profilePS5015714.835192219IPR007087Zinc finger, C2H2
SMARTSM003551.4E-4192214IPR015880Zinc finger, C2H2-like
PfamPF000964.8E-6192214IPR007087Zinc finger, C2H2
PROSITE patternPS000280194214IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-17211242IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.193220243IPR007087Zinc finger, C2H2
SMARTSM003555.0E-4220242IPR015880Zinc finger, C2H2-like
PfamPF000961.3E-5220242IPR007087Zinc finger, C2H2
PROSITE patternPS000280222242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSSRRKNPHP KRAENARTVL KGEKEERPVL LCVRIPDDDD EDDDEEDVAF DEVVEQQNEK  60
LRKEKTATKR GGKRKRGQQH ECDVCEKVFD RPSSLAIHMR IHTNEKPYEC DVCEMRFRHS  120
STLRVHERIH TNEKPYECDI CDKAFRESGK LKEHMRIHTN EKPYECDVCE KRFSRSGTLQ  180
SHMRIHTNEK PYECDVCEKR FRTSSQLKVH VRIHTNEKAY ECDVCEKRFT QSCNLKTHMR  240
THR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A1e-44802424188Aart
2i13_B1e-44802424188Aart
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822640.0FO082264.1 Bathycoccus prasinos genomic : Chromosome_15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007508772.11e-179PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
SwissprotA6NK537e-55ZN233_HUMAN; Zinc finger protein 233
SwissprotP243994e-55ZN239_MOUSE; Zinc finger protein 239
TrEMBLK8FCU31e-177K8FCU3_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007508772.11e-178(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-13C2H2 family protein