PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy16g00660
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 238aa    MW: 26668 Da    PI: 10.4008
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy16g00660genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029140159221
                    EETTTTEEESSHHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                    kC+ C  sF+++ +L+ H++
  Bathy16g00660 140 KCELCELSFTSRAQLEEHLQ 159
                    7*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.88E-9124167No hitNo description
SMARTSM004510.087136170IPR003604Zinc finger, U1-type
SMARTSM003550.31139163IPR015880Zinc finger, C2H2-like
PfamPF128741.3E-7140163No hitNo description
PROSITE patternPS000280141163IPR007087Zinc finger, C2H2
SuperFamilySSF576672.05E-8191228No hitNo description
SMARTSM004510.016193227IPR003604Zinc finger, U1-type
SMARTSM0035577196220IPR015880Zinc finger, C2H2-like
PfamPF128747.6E-5197220No hitNo description
PROSITE patternPS000280198220IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MKEKKEKKEK KKRKSSTQRE EEEENGDKKK KKKRLEITSN PTTNLNDIDA EIERVLSRLK  60
NEKESENDSN NSESSSSSSS SSSLGRIAPL PPEAYPEHYG YGSKKGNEFA FKGKREGKAV  120
APRSNALIPG LAEREKNRPK CELCELSFTS RAQLEEHLQG KGHRKKAGGV NGGVARSQGH  180
RQQQHVRREV KPPDGPHCKL CKKIFTSLAQ KEEHEGGKWH KMRVDGKLAP SNKPYVT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11132KRKSSTQREEEEENGDKKKKKK
21133KRKSSTQREEEEENGDKKKKKKR
32634DKKKKKKRL
42733KKKKKKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822630.0FO082263.1 Bathycoccus prasinos genomic : Chromosome_16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007508674.11e-172predicted protein
TrEMBLK8EQG31e-171K8EQG3_9CHLO; Uncharacterized protein
STRINGXP_007508674.11e-171(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP844133