PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy16g01780
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 210aa    MW: 25000.4 Da    PI: 7.5632
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy16g01780genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H229.22.2e-09102124123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F  +s+L+rH+rtH
  Bathy16g01780 102 YECDVCEKVFAKPSDLTRHMRTH 124
                    99********************9 PP
2zf-C2H223.81.1e-07130152123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+   nLk H+r H
  Bathy16g01780 130 YECDVCEKRFTLAGNLKIHMRIH 152
                    99*******************99 PP
3zf-C2H223.71.3e-07158180123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+   +Lk+H+r H
  Bathy16g01780 158 YECDVCEKRFTLAGSLKSHMRIH 180
                    99*******************99 PP
4zf-C2H219.82.1e-06186209123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C  C k++++  +Lk H+rt H
  Bathy16g01780 186 YECDVCEKRYRHANTLKYHMRTqH 209
                    99********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-17101131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015716.332102129IPR007087Zinc finger, C2H2
SMARTSM003553.6E-5102124IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
SuperFamilySSF576672.31E-24110167No hitNo description
PfamPF134652.4E-10116140IPR007087Zinc finger, C2H2
PROSITE profilePS5015715.542130157IPR007087Zinc finger, C2H2
SMARTSM003552.1E-4130152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.5E-17132151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-18152177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.02E-19152204No hitNo description
PROSITE profilePS5015715.895158185IPR007087Zinc finger, C2H2
PfamPF128740.0019158180No hitNo description
SMARTSM003551.4E-4158180IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-14178207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.468186209IPR007087Zinc finger, C2H2
PfamPF128740.01186206No hitNo description
SMARTSM003550.0018186209IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280188209IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MRRKNPHPKR AVNARTVLKV AREEPLVLCS KIPDEDDDFE GNHHQIQKEE EEEEDEADED  60
VERLRRILSV PRDDNVVMEQ NHQMREEETA FIAKGVKRKR TYECDVCEKV FAKPSDLTRH  120
MRTHTKEKPY ECDVCEKRFT LAGNLKIHMR IHTKEKPYEC DVCEKRFTLA GSLKSHMRIH  180
TNEKPYECDV CEKRYRHANT LKYHMRTQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A1e-2910020720188Aart
2i13_B1e-2910020720188Aart
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822630.0FO082263.1 Bathycoccus prasinos genomic : Chromosome_16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007508642.11e-153PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
SwissprotP081552e-36KRH1_DROME; Krueppel homolog 1
TrEMBLK8EQN91e-152K8EQN9_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007508642.11e-152(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-13C2H2 family protein