PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0124s0192.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ZF-HD
Protein Properties Length: 168aa    MW: 19661.3 Da    PI: 9.8856
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0124s0192.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer79.64e-25353258
          ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                         ++++Y+eC++NhAa+lG++a+DGC+E+ +s      +++  CaACgCHR++HRr  +
  Bostr.0124s0192.1.p  3 SSCVYRECMRNHAAKLGSYAIDGCREYSQS------VTGDLCAACGCHRSYHRRVDV 53
                         5789************************99......7788**************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257748.0E-20450IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.0E-18651IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152318.122751IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.7E-16750IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.1E-1691164IPR009057Homeodomain-like
SuperFamilySSF466891.25E-796163IPR009057Homeodomain-like
TIGRFAMsTIGR015659.0E-30105164IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MQSSCVYREC MRNHAAKLGS YAIDGCREYS QSVTGDLCAA CGCHRSYHRR VDVISSAQIS  60
HTRFPFTSLR RVKQLARLKW KTAEERKEDE EDTEETSTEE KMTVQRRRKS KFTAEQREAM  120
KNYAAKLGWT LKDKRAIREE IRVFCEGIGV SRYLFKTWVN NNKKFYH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104109QRRRKS
2105110RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00143DAPTransfer from AT1G14687Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0124s0192.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069170.0AC006917.6 Genomic sequence for Arabidopsis thaliana BAC F10B6 from chromosome I, complete sequence.
GenBankAY0865230.0AY086523.1 Arabidopsis thaliana clone 25577 mRNA, complete sequence.
GenBankBT0039420.0BT003942.1 Arabidopsis thaliana clone RAFL15-16-E16 (R20740) unknown protein (At1g14687) mRNA, complete cds.
GenBankBT0050270.0BT005027.1 Arabidopsis thaliana clone U20740 unknown protein (At1g14687) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010458980.11e-104PREDICTED: zinc-finger homeodomain protein 14
SwissprotQ9LQW37e-99ZHD14_ARATH; Zinc-finger homeodomain protein 14
TrEMBLR0I8E91e-101R0I8E9_9BRAS; Uncharacterized protein
STRINGBostr.0124s0192.1.p1e-122(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137282124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14687.15e-96homeobox protein 32